prot_P-canaliculata_contig9796.23892.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9796.23892.1
Unique Nameprot_P-canaliculata_contig9796.23892.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length118
Homology
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BLAST of mRNA_P-canaliculata_contig9796.23892.1 vs. uniprot
Match: F0W6E8_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6E8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.280e-10
Identity = 37/118 (31.36%), Postives = 64/118 (54.24%), Query Frame = 0 
Query:    1 MMEIDKLAADLHRLGDKSKTKQRKCVIIVSGLSADFEMECRMLENNPDDLNRAEIERVVGNQYNRFLRQQQDSKALSASRGTVTANRGKRKDRRPHYKFNGKCFKCGKKGHRAGDCRS 118
            MM+ DKL  ++  + D     Q   VI++  L  DF+   R+LE+ P  ++    +  +  ++ R   ++    AL A+RG ++  + +R       +FNGKCF+CGK+GHR  +CR+
Sbjct:    4 MMKFDKLTMEIAAMED-GLNDQEMIVILLGSLPVDFDPIVRILESMPG-IDLISAKGTLQREWERMQNRESSEVALQATRGRISKKKYQRHPGTLGEEFNGKCFQCGKRGHRKNECRT 119
[Close]
BLAST of mRNA_P-canaliculata_contig9796.23892.1 vs. uniprot
Match: F0X0S7_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0S7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.270e-8
Identity = 38/120 (31.67%), Postives = 63/120 (52.50%), Query Frame = 0 
Query:    1 MMEIDKLAADLHRLGDKSKTKQRKCVIIVSGLSADFEMECRMLEN--NPDDLNRAEIERVVGNQYNRFLRQQQDSKALSASRGTVTANRGKRKDRRPHYKFNGKCFKCGKKGHRAGDCRS 118
            MM+ DKL  ++  +GD     Q   VI++  L  +F+   R+LEN    D ++  E  R    ++ R   ++     L  +RG ++  + +R       +FNGKCF+CGK+GHR  +CR+
Sbjct:    4 MMKFDKLTMEMAAMGD-GLNDQEMLVILLGSLPLNFDPIVRILENITGIDLMSAKETPR---REWGRIKNRESSEVTLEVTRGRISKKKYQRNPGTVGEEFNGKCFQCGKRGHRKYECRT 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9796.23892.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
F0W6E8_9STRA4.280e-1031.36Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
F0X0S7_9STRA5.270e-831.67Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 102..118
e-value: 0.0019
score: 27.5
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 101..117
e-value: 1.5E-4
score: 21.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 102..118
score: 10.411
NoneNo IPR availableGENE3D4.10.60.10coord: 69..118
e-value: 2.9E-5
score: 25.9
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 86..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9796contigP-canaliculata_contig9796:727..1080 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9796.23892.1mRNA_P-canaliculata_contig9796.23892.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9796 727..1080 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9796.23892.1 ID=prot_P-canaliculata_contig9796.23892.1|Name=mRNA_P-canaliculata_contig9796.23892.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=118bp
MMEIDKLAADLHRLGDKSKTKQRKCVIIVSGLSADFEMECRMLENNPDDL
NRAEIERVVGNQYNRFLRQQQDSKALSASRGTVTANRGKRKDRRPHYKFN
GKCFKCGKKGHRAGDCRS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf