mRNA_P-canaliculata_contig9796.23892.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9796.23892.1 vs. uniprot
Match: F0W6E8_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6E8_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 4.280e-10 Identity = 37/118 (31.36%), Postives = 64/118 (54.24%), Query Frame = 1 Query: 1 MMEIDKLAADLHRLGDKSKTKQRKCVIIVSGLSADFEMECRMLENNPDDLNRAEIERVVGNQYNRFLRQQQDSKALSASRGTVTANRGKRKDRRPHYKFNGKCFKCGKKGHRAGDCRS 354
MM+ DKL ++ + D Q VI++ L DF+ R+LE+ P ++ + + ++ R ++ AL A+RG ++ + +R +FNGKCF+CGK+GHR +CR+
Sbjct: 4 MMKFDKLTMEIAAMED-GLNDQEMIVILLGSLPVDFDPIVRILESMPG-IDLISAKGTLQREWERMQNRESSEVALQATRGRISKKKYQRHPGTLGEEFNGKCFQCGKRGHRKNECRT 119
BLAST of mRNA_P-canaliculata_contig9796.23892.1 vs. uniprot
Match: F0X0S7_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0S7_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 5.270e-8 Identity = 38/120 (31.67%), Postives = 63/120 (52.50%), Query Frame = 1 Query: 1 MMEIDKLAADLHRLGDKSKTKQRKCVIIVSGLSADFEMECRMLEN--NPDDLNRAEIERVVGNQYNRFLRQQQDSKALSASRGTVTANRGKRKDRRPHYKFNGKCFKCGKKGHRAGDCRS 354
MM+ DKL ++ +GD Q VI++ L +F+ R+LEN D ++ E R ++ R ++ L +RG ++ + +R +FNGKCF+CGK+GHR +CR+
Sbjct: 4 MMKFDKLTMEMAAMGD-GLNDQEMLVILLGSLPLNFDPIVRILENITGIDLMSAKETPR---REWGRIKNRESSEVTLEVTRGRISKKKYQRNPGTVGEEFNGKCFQCGKRGHRKYECRT 119 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9796.23892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9796.23892.1 >prot_P-canaliculata_contig9796.23892.1 ID=prot_P-canaliculata_contig9796.23892.1|Name=mRNA_P-canaliculata_contig9796.23892.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=118bp MMEIDKLAADLHRLGDKSKTKQRKCVIIVSGLSADFEMECRMLENNPDDLback to top mRNA from alignment at P-canaliculata_contig9796:727..1080- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9796.23892.1 ID=mRNA_P-canaliculata_contig9796.23892.1|Name=mRNA_P-canaliculata_contig9796.23892.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=354bp|location=Sequence derived from alignment at P-canaliculata_contig9796:727..1080- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9796:727..1080- >mRNA_P-canaliculata_contig9796.23892.1 ID=mRNA_P-canaliculata_contig9796.23892.1|Name=mRNA_P-canaliculata_contig9796.23892.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at P-canaliculata_contig9796:727..1080- (Pelvetia canaliculata dioecious)back to top |