mRNA_P-canaliculata_contig97892.23885.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97892.23885.1
Unique NamemRNA_P-canaliculata_contig97892.23885.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig97892.23885.1 vs. uniprot
Match: A0A0Q7WAG5_9CAUL (FliH domain-containing protein n=4 Tax=Caulobacter TaxID=75 RepID=A0A0Q7WAG5_9CAUL)

HSP 1 Score: 52.0 bits (123), Expect = 2.700e-5
Identity = 48/141 (34.04%), Postives = 74/141 (52.48%), Query Frame = 1 
Query:    1 MSLVTLFNRDAGWLATDQRIFASDSLEDTLGVVELAAELSRLIDCQQAVIEQARREGFAAGLVQGADEARQAGRQTTAQALLALEHRYASAEAQQRDQVSQLAVEVVRRIAASVAPAEWLYAQASTAAGDLMDESRLVLRV 423
            MS + L +  +  L TD  I      ED   + + A  ++ L D +QA  + A  EGFA G  +GA +A +     TA+ L  + +   +  A+ R   + LA+++VRRIAA +AP + L A A  AA DL+ E  + +RV
Sbjct:    1 MSYLLLASAPSAALLTDDPILRR---EDVARLTQAAEIVASLEDHRQAARDAAVAEGFAHGRTEGAAKAAR----ETAETLAGVHNALQAERARLRASSAALALDIVRRIAAGLAPEDVLAALAEQAARDLLPEEPIGVRV 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97892.23885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0Q7WAG5_9CAUL2.700e-534.04FliH domain-containing protein n=4 Tax=Caulobacter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97892contigP-canaliculata_contig97892:41..472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817341.243489-CDS-P-canaliculata_contig97892:40..4721622817341.243489-CDS-P-canaliculata_contig97892:40..472Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97892 41..472 -
1693495234.2886896-CDS-P-canaliculata_contig97892:40..4721693495234.2886896-CDS-P-canaliculata_contig97892:40..472Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97892 41..472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97892.23885.1prot_P-canaliculata_contig97892.23885.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97892 41..472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97892.23885.1

>prot_P-canaliculata_contig97892.23885.1 ID=prot_P-canaliculata_contig97892.23885.1|Name=mRNA_P-canaliculata_contig97892.23885.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=144bp
MSLVTLFNRDAGWLATDQRIFASDSLEDTLGVVELAAELSRLIDCQQAVI
EQARREGFAAGLVQGADEARQAGRQTTAQALLALEHRYASAEAQQRDQVS
QLAVEVVRRIAASVAPAEWLYAQASTAAGDLMDESRLVLRVHAS
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mRNA from alignment at P-canaliculata_contig97892:41..472-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97892.23885.1 ID=mRNA_P-canaliculata_contig97892.23885.1|Name=mRNA_P-canaliculata_contig97892.23885.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at P-canaliculata_contig97892:41..472- (Pelvetia canaliculata dioecious)
ATGAGCCTGGTCACACTGTTCAATCGCGATGCTGGCTGGCTGGCCACTGA
CCAGCGAATCTTTGCCAGTGATTCCCTTGAGGACACGCTTGGCGTCGTGG
AACTTGCCGCCGAGCTTTCCCGATTGATCGATTGCCAGCAGGCAGTCATC
GAGCAGGCGCGGCGTGAAGGGTTTGCCGCCGGGCTCGTACAGGGCGCCGA
CGAGGCTCGACAGGCCGGCAGGCAAACCACGGCGCAAGCGTTGCTTGCGC
TGGAGCACCGCTATGCCAGCGCGGAGGCGCAGCAGCGTGACCAGGTGAGC
CAGCTTGCCGTGGAAGTCGTGCGCAGGATTGCCGCCTCGGTTGCACCGGC
CGAATGGCTATACGCTCAGGCGAGTACTGCAGCTGGCGACCTGATGGACG
AATCGCGGCTCGTTCTGCGGGTACACGCGTCG
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Coding sequence (CDS) from alignment at P-canaliculata_contig97892:41..472-

>mRNA_P-canaliculata_contig97892.23885.1 ID=mRNA_P-canaliculata_contig97892.23885.1|Name=mRNA_P-canaliculata_contig97892.23885.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at P-canaliculata_contig97892:41..472- (Pelvetia canaliculata dioecious)
ATGAGCCTGGTCACACTGTTCAATCGCGATGCTGGCTGGCTGGCCACTGA
CCAGCGAATCTTTGCCAGTGATTCCCTTGAGGACACGCTTGGCGTCGTGG
AACTTGCCGCCGAGCTTTCCCGATTGATCGATTGCCAGCAGGCAGTCATC
GAGCAGGCGCGGCGTGAAGGGTTTGCCGCCGGGCTCGTACAGGGCGCCGA
CGAGGCTCGACAGGCCGGCAGGCAAACCACGGCGCAAGCGTTGCTTGCGC
TGGAGCACCGCTATGCCAGCGCGGAGGCGCAGCAGCGTGACCAGGTGAGC
CAGCTTGCCGTGGAAGTCGTGCGCAGGATTGCCGCCTCGGTTGCACCGGC
CGAATGGCTATACGCTCAGGCGAGTACTGCAGCTGGCGACCTGATGGACG
AATCGCGGCTCGTTCTGCGGGTACACGCGTCGATGAGCCTGGTCACACTG
TTCAATCGCGATGCTGGCTGGCTGGCCACTGACCAGCGAATCTTTGCCAG
TGATTCCCTTGAGGACACGCTTGGCGTCGTGGAACTTGCCGCCGAGCTTT
CCCGATTGATCGATTGCCAGCAGGCAGTCATCGAGCAGGCGCGGCGTGAA
GGGTTTGCCGCCGGGCTCGTACAGGGCGCCGACGAGGCTCGACAGGCCGG
CAGGCAAACCACGGCGCAAGCGTTGCTTGCGCTGGAGCACCGCTATGCCA
GCGCGGAGGCGCAGCAGCGTGACCAGGTGAGCCAGCTTGCCGTGGAAGTC
GTGCGCAGGATTGCCGCCTCGGTTGCACCGGCCGAATGGCTATACGCTCA
GGCGAGTACTGCAGCTGGCGACCTGATGGACGAATCGCGGCTCGTTCTGC
GGGTACACGCGTCG
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