prot_P-canaliculata_contig97892.23885.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig97892.23885.1
Unique Name	prot_P-canaliculata_contig97892.23885.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	144

Homology

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BLAST of mRNA_P-canaliculata_contig97892.23885.1 vs. uniprot
Match: A0A0Q7WAG5_9CAUL (FliH domain-containing protein n=4 Tax=Caulobacter TaxID=75 RepID=A0A0Q7WAG5_9CAUL)

HSP 1 Score: 52.0 bits (123), Expect = 2.700e-5
Identity = 48/141 (34.04%), Postives = 74/141 (52.48%), Query Frame = 0

Query:    1 MSLVTLFNRDAGWLATDQRIFASDSLEDTLGVVELAAELSRLIDCQQAVIEQARREGFAAGLVQGADEARQAGRQTTAQALLALEHRYASAEAQQRDQVSQLAVEVVRRIAASVAPAEWLYAQASTAAGDLMDESRLVLRV 141
            MS + L +  +  L TD  I      ED   + + A  ++ L D +QA  + A  EGFA G  +GA +A +     TA+ L  + +   +  A+ R   + LA+++VRRIAA +AP + L A A  AA DL+ E  + +RV
Sbjct:    1 MSYLLLASAPSAALLTDDPILRR---EDVARLTQAAEIVASLEDHRQAARDAAVAEGFAHGRTEGAAKAAR----ETAETLAGVHNALQAERARLRASSAALALDIVRRIAAGLAPEDVLAALAEQAARDLLPEEPIGVRV 134

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig97892.23885.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig97892.23885.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1

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POSITION

0


Match Name	E-value	Identity	Description
A0A0Q7WAG5_9CAUL	2.700e-5	34.04	FliH domain-containing protein n=4 Tax=Caulobacter...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

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POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..56

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig97892	contig	P-canaliculata_contig97892:41..472 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig97892.23885.1	mRNA_P-canaliculata_contig97892.23885.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig97892 41..472 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig97892.23885.1 ID=prot_P-canaliculata_contig97892.23885.1|Name=mRNA_P-canaliculata_contig97892.23885.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=144bp
MSLVTLFNRDAGWLATDQRIFASDSLEDTLGVVELAAELSRLIDCQQAVI
EQARREGFAAGLVQGADEARQAGRQTTAQALLALEHRYASAEAQQRDQVS
QLAVEVVRRIAASVAPAEWLYAQASTAAGDLMDESRLVLRVHAS