prot_P-canaliculata_contig9735.23821.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig9735.23821.1
Unique Name	prot_P-canaliculata_contig9735.23821.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	195

Homology

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BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: A0A6G1LHT3_9PEZI (RNA-binding domain-containing protein n=1 Tax=Teratosphaeria nubilosa TaxID=161662 RepID=A0A6G1LHT3_9PEZI)

HSP 1 Score: 145 bits (367), Expect = 5.050e-41
Identity = 80/99 (80.81%), Postives = 83/99 (83.84%), Query Frame = 0

Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPGGGXXX----GRGGY 95
            GLAWHTDD TLR KFEE+GQVDEAV        VVKDR+TGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVD+ASERAPG G XX    GRGGY
Sbjct:    8 GLAWHTDDQTLRTKFEEYGQVDEAV--------VVKDRDTGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDKASERAPGSGGXXXXXGGRGGY 98

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BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: A0A4U0TXT9_9PEZI (RRM domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=A0A4U0TXT9_9PEZI)

HSP 1 Score: 139 bits (349), Expect = 5.420e-38
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = 0

Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPGGG 87
            GLAWHTDD TLR KFEEFGQVDEA+        VVKDR+TGRSRGFGFVRF++D+A+++AIAAMNNVEFDGRTIRVD+ASERAPGGG
Sbjct:    8 GLAWHTDDQTLRQKFEEFGQVDEAI--------VVKDRDTGRSRGFGFVRFSEDSASDAAIAAMNNVEFDGRTIRVDKASERAPGGG 86

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BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: M2N8A3_BAUPA (RRM domain-containing protein n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2N8A3_BAUPA)

HSP 1 Score: 137 bits (346), Expect = 6.430e-38
Identity = 69/87 (79.31%), Postives = 76/87 (87.36%), Query Frame = 0

Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPGGG 87
            GLAWHTDD TLR KFEEFGQV+EA+        V+KDR+TGRSRGFGFVRFA+DAAA+SAIAAMNNVEFDGRTIRVD+ASERA GGG
Sbjct:    9 GLAWHTDDQTLRAKFEEFGQVEEAI--------VIKDRDTGRSRGFGFVRFAEDAAADSAIAAMNNVEFDGRTIRVDKASERAQGGG 87

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BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: UPI000CE18714 (glycine-rich RNA-binding, abscisic acid-inducible protein-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE18714)

HSP 1 Score: 135 bits (341), Expect = 4.230e-37
Identity = 67/86 (77.91%), Postives = 75/86 (87.21%), Query Frame = 0

Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPGG 86
            GLAWHTDD TLR KFEEFGQVDEA+        VVKDR+TGRSRGFGFVRF +D+A+++AIAAMNNVEFDGRTIRVD+ASERAPGG
Sbjct:    8 GLAWHTDDQTLRAKFEEFGQVDEAI--------VVKDRDTGRSRGFGFVRFTEDSASDAAIAAMNNVEFDGRTIRVDKASERAPGG 85

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BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: A0A6A6PYZ6_9PEZI (RRM domain-containing protein n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6PYZ6_9PEZI)

HSP 1 Score: 134 bits (336), Expect = 2.070e-36
Identity = 67/85 (78.82%), Postives = 73/85 (85.88%), Query Frame = 0

Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPG 85
            GLAWHTDD TLR KFEEFGQVDEA+        VVKDR+TGRSRGFGFVRFA+D+AA+SAIAAMNNVEFDGRTIRVD+ASER  G
Sbjct:    8 GLAWHTDDQTLRQKFEEFGQVDEAI--------VVKDRDTGRSRGFGFVRFAEDSAADSAIAAMNNVEFDGRTIRVDKASERGAG 84

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BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: M2YN31_PSEFD (RRM domain-containing protein n=2 Tax=Pseudocercospora TaxID=131324 RepID=M2YN31_PSEFD)

HSP 1 Score: 133 bits (335), Expect = 4.150e-36
Identity = 68/85 (80.00%), Postives = 73/85 (85.88%), Query Frame = 0

Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPG 85
            GLAWHTDD TLR KFEEFGQVDEAV        VVKDR+TGRSRGFGFVRFA+DAAA+SAIAAMNNVEFDGRTIRVD+AS+R  G
Sbjct:    8 GLAWHTDDQTLRTKFEEFGQVDEAV--------VVKDRDTGRSRGFGFVRFAEDAAADSAIAAMNNVEFDGRTIRVDKASDRGSG 84

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BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: A0A6A6P7C7_9PEZI (RRM domain-containing protein n=1 Tax=Lineolata rhizophorae TaxID=578093 RepID=A0A6A6P7C7_9PEZI)

HSP 1 Score: 132 bits (332), Expect = 5.510e-36
Identity = 66/96 (68.75%), Postives = 78/96 (81.25%), Query Frame = 0

Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPGGGXXXGRGGYN 96
            GLAWHTDD TLR KFEEFG V+EAV        VVKDR+TGRSRGFGFVRF+ ++ A++AIA+MNNVEFDGR IRVD+AS+++ GGG   GRGGYN
Sbjct:    8 GLAWHTDDATLRAKFEEFGHVEEAV--------VVKDRDTGRSRGFGFVRFSQESEADAAIASMNNVEFDGRLIRVDKASDKSGGGGGFQGRGGYN 95

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BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: F9XC08_ZYMTI (RRM domain-containing protein n=5 Tax=Zymoseptoria TaxID=1047167 RepID=F9XC08_ZYMTI)

HSP 1 Score: 132 bits (332), Expect = 1.280e-35
Identity = 66/86 (76.74%), Postives = 72/86 (83.72%), Query Frame = 0

Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPGG 86
            GLAWHTDD TLR KFEE+GQVDEA+        VVKDR+TGRSRGFGFVRFADDA A++AI AMNNVEFDGRTIRVD+ASER  GG
Sbjct:    8 GLAWHTDDQTLRAKFEEYGQVDEAI--------VVKDRDTGRSRGFGFVRFADDAGADAAITAMNNVEFDGRTIRVDKASERGAGG 85

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BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: A0A3M7BRA4_HORWE (RRM domain-containing protein (Fragment) n=1 Tax=Hortaea werneckii TaxID=91943 RepID=A0A3M7BRA4_HORWE)

HSP 1 Score: 130 bits (327), Expect = 1.530e-35
Identity = 67/91 (73.63%), Postives = 73/91 (80.22%), Query Frame = 0

Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPGGGXXXG 91
            GLAWHTDD TLR KFEEFGQVDEA+        VVKDR+TGRSRGFGFVRFA+D+AAE+AIA MNNVEFDGR IRVD+ASER  GG    G
Sbjct:    8 GLAWHTDDQTLRLKFEEFGQVDEAI--------VVKDRDTGRSRGFGFVRFAEDSAAENAIAQMNNVEFDGRQIRVDKASERPAGGSGGFG 90

[Close]

BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: A0A6A6CAZ6_9PEZI (RRM domain-containing protein (Fragment) n=1 Tax=Zasmidium cellare ATCC 36951 TaxID=1080233 RepID=A0A6A6CAZ6_9PEZI)

HSP 1 Score: 129 bits (325), Expect = 1.580e-35
Identity = 65/85 (76.47%), Postives = 72/85 (84.71%), Query Frame = 0

Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPG 85
            GLAWHTDD TLR KFEEFG VDEA+        VVKDR+TGRSRGFGFVRF+++AAAESAI+AMNNVEFDGRTIRVD+ASER  G
Sbjct:   11 GLAWHTDDQTLRSKFEEFGAVDEAI--------VVKDRDTGRSRGFGFVRFSEEAAAESAISAMNNVEFDGRTIRVDKASERGSG 87

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6G1LHT3_9PEZI	5.050e-41	80.81	RNA-binding domain-containing protein n=1 Tax=Tera...	[more]
A0A4U0TXT9_9PEZI	5.420e-38	78.16	RRM domain-containing protein n=3 Tax=Eukaryota Ta...	[more]
M2N8A3_BAUPA	6.430e-38	79.31	RRM domain-containing protein n=1 Tax=Baudoinia pa...	[more]
UPI000CE18714	4.230e-37	77.91	glycine-rich RNA-binding, abscisic acid-inducible ...	[more]
A0A6A6PYZ6_9PEZI	2.070e-36	78.82	RRM domain-containing protein n=1 Tax=Neohortaea a...	[more]
M2YN31_PSEFD	4.150e-36	80.00	RRM domain-containing protein n=2 Tax=Pseudocercos...	[more]
A0A6A6P7C7_9PEZI	5.510e-36	68.75	RRM domain-containing protein n=1 Tax=Lineolata rh...	[more]
F9XC08_ZYMTI	1.280e-35	76.74	RRM domain-containing protein n=5 Tax=Zymoseptoria...	[more]
A0A3M7BRA4_HORWE	1.530e-35	73.63	RRM domain-containing protein (Fragment) n=1 Tax=H...	[more]
A0A6A6CAZ6_9PEZI	1.580e-35	76.47	RRM domain-containing protein (Fragment) n=1 Tax=Z...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 1..77 e-value: 8.4E-15 score: 65.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 2..75 e-value: 5.5E-14 score: 51.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..81 score: 15.716
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..98 e-value: 5.3E-25 score: 89.9
None	No IPR available	PANTHER	PTHR15241:SF181		coord: 1..152
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..152
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 1..107

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig9735	contig	P-canaliculata_contig9735:6170..6980 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig9735.23821.1	mRNA_P-canaliculata_contig9735.23821.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig9735 6170..6980 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig9735.23821.1 ID=prot_P-canaliculata_contig9735.23821.1|Name=mRNA_P-canaliculata_contig9735.23821.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=195bp
GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVR
FADDAAAESAIAAMNNVEFDGRTIRVDRASERAPGGGGGGGRGGYNGGGG
GYGHGGGGYSRGGGYGGGGNGGGYPQQGGGGYGYGGGGQDWSQSGPGYGA
AYGGQSGSNLSDPLTDISMFHIGGYQQQSNGGDGYGQQQQGGGW*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf