mRNA_P-canaliculata_contig101244.214.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101244.214.1
Unique NamemRNA_P-canaliculata_contig101244.214.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig101244.214.1 vs. uniprot
Match: A0A6H5KNF9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNF9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.140e-11
Identity = 40/84 (47.62%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   16 GLPPLLRAAEKGITVAVRVLLGAPTINVNARAPRN--KKTALVLAARAGHLEAVQMLLGAGADISLADRRDWTAMHFAAWKGHL 261
            G  P+ RAA  G+T A+R LL   +  +N R  R   K        ++G      MLLGAGA  SLADRR WTA+HFA+WKGHL
Sbjct:   29 GYLPIQRAAANGLTAALRELLSTSSTTINKRRKRGIGKIDLDATVPQSGKT----MLLGAGASASLADRRGWTALHFASWKGHL 108          
BLAST of mRNA_P-canaliculata_contig101244.214.1 vs. uniprot
Match: A0A526RU79_9HYPH (Ankyrin repeat domain-containing protein (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A526RU79_9HYPH)

HSP 1 Score: 56.2 bits (134), Expect = 6.040e-8
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   25 PLLRAAEKGITVAVRVLLGAPTINVNARAPRNKKTALVLAARAGHLEAVQMLLGAGADISLADRRDWTAMHFAAWKGHLCE 267
            PL  AA KG    ++ L+  P I++NARA    +TAL+ AAR GHL+ V++L+  GAD++LAD+    +    A KG   E
Sbjct:    8 PLSLAAAKGHFECIQALVKHPQIDINARADYYGRTALIEAARNGHLDVVRLLVEHGADVNLADKTGRNSALIEAIKGRHYE 88          
BLAST of mRNA_P-canaliculata_contig101244.214.1 vs. uniprot
Match: UPI001EE6334B (ankyrin repeat, PH and SEC7 domain containing protein secG-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE6334B)

HSP 1 Score: 57.4 bits (137), Expect = 1.420e-7
Identity = 30/78 (38.46%), Postives = 46/78 (58.97%), Query Frame = 1
Query:   28 LLRAAEKGITVAVRVLLGAPTINVNARAPRNKKTALVLAARAGHLEAVQMLLGAGADISLADRRDWTAMHFAAWKGHL 261
            L  A   G    VR +L A  +++N R    ++TA++ AAR GH E V++L+G GAD+SL D+     +H+A W G +
Sbjct:  253 LYSACTDGDLGTVRWILAAGHVDINTRGGWRRRTAVMEAARWGHKEVVELLVGKGADVSLLDKYRRNILHYACWSGDV 330          
BLAST of mRNA_P-canaliculata_contig101244.214.1 vs. uniprot
Match: A0A8I0KAH5_9RICK (Ankyrin repeat domain-containing protein n=1 Tax=Wolbachia endosymbiont of Pentalonia nigronervosa TaxID=1301914 RepID=A0A8I0KAH5_9RICK)

HSP 1 Score: 56.2 bits (134), Expect = 3.230e-7
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 1
Query:   22 PPLLRAAEKGITVAVRVLL----GAPTINVNARAPRNKKTALVLAARAGHLEAVQMLLGAGADISLADRRDWTAMHFAA-----WKGH 258
            PPL +AAE      +R LL    G   ++VNA   RNK+TAL  AA  GH+EAV+ LL AGADI   ++ D T ++ A+     ++GH
Sbjct:   11 PPLHQAAENNEVDVMRGLLKKEGGEEDVDVNAVEDRNKETALHFAAGFGHIEAVEFLLAAGADIDAKNKYDETPLYCASRDHRDYQGH 98          
BLAST of mRNA_P-canaliculata_contig101244.214.1 vs. uniprot
Match: UPI001CFBE906 (notch-regulated ankyrin repeat-containing protein n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFBE906)

HSP 1 Score: 53.1 bits (126), Expect = 5.710e-7
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 1
Query:   37 AAEKGITVAVRVLLGAPT---INVNARAPRNKKTALVLAARAGHLEAVQMLLGAGADISLADRRDWTAMHFAAWKGH 258
            A +KG T  +  LL   T    NVN+  P    TAL  + R G+LE V++L+  GADI LA+R  W+A+H AA+ GH
Sbjct:   18 AVKKGNTKELHSLLQNMTSSEFNVNSFFPEEGHTALHQSVRDGNLELVKLLVKFGADIRLANRDGWSALHIAAFGGH 94          
BLAST of mRNA_P-canaliculata_contig101244.214.1 vs. uniprot
Match: A0A8K0SHU8_9HYPO (Glycerophosphoryl diester phosphodiesterase family-domain-containing protein n=1 Tax=Stachybotrys elegans TaxID=80388 RepID=A0A8K0SHU8_9HYPO)

HSP 1 Score: 54.3 bits (129), Expect = 1.810e-6
Identity = 29/75 (38.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   37 AAEKGITVAVRVLLGAPTINVNARAPRNKKTALVLAARAGHLEAVQMLLGAGADISLADRRDWTAMHFAAWKGHL 261
            AAE+G++  V+ ++ A  ++VNA+      T L +A+  GHL+ V+ L+ AGAD  + D R+W A+ +AA++GH+
Sbjct:  414 AAEQGLSELVKDIV-ACGVDVNAQDKTRSWTPLTIASVHGHLDTVKALILAGADTRVPDHREWLAIDYAAYRGHM 487          
BLAST of mRNA_P-canaliculata_contig101244.214.1 vs. uniprot
Match: UPI001FEE97D0 (ankyrin repeat domain-containing protein n=1 Tax=Mesorhizobium sp. M8A.F.Ca.ET.142.01.1.1 TaxID=2563958 RepID=UPI001FEE97D0)

HSP 1 Score: 50.4 bits (119), Expect = 3.640e-6
Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   37 AAEKGITVAVRVLLGAPTINVNARAPRNKKTALVLAARAGHLEAVQMLLGAGADISLADRRDWTAMHFAAWKG 255
            AA KG    ++ L+  P I+++ARA    +TAL+ AAR GHL+AV++L+  GAD++ AD+    +    A KG
Sbjct:    4 AAAKGHYDCIQALVRHPQIDIDARADYYGRTALIEAARNGHLDAVRLLVEHGADVNAADKTGRNSALIEAIKG 76          
BLAST of mRNA_P-canaliculata_contig101244.214.1 vs. uniprot
Match: UPI00165810C7 (ankyrin repeat domain-containing protein n=1 Tax=Thauera sp. CAU 1555 TaxID=2767595 RepID=UPI00165810C7)

HSP 1 Score: 52.8 bits (125), Expect = 3.740e-6
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 1
Query:   10 HDGLPPLLRAAEKGITVAVRVLLGAPTINVNARAPRNKKTALVLAARAGHLEAVQMLLGAGADISLADRRDWTAMHFAAWKGH 258
            HDG  PL  AA +G    +  LL A    ++A  P N+ TAL+LAAR GH++AV+ LL AGAD +L + R  TA  +A  +G+
Sbjct:  124 HDGWAPLHYAAFEGRLAILDKLL-ARGAKIDALTP-NRATALMLAARNGHVDAVRRLLRAGADTALKNDRGLTAAEWARTQGN 204          
BLAST of mRNA_P-canaliculata_contig101244.214.1 vs. uniprot
Match: A0A670KBD5_PODMU (NOTCH regulated ankyrin repeat protein n=1 Tax=Podarcis muralis TaxID=64176 RepID=A0A670KBD5_PODMU)

HSP 1 Score: 51.2 bits (121), Expect = 4.040e-6
Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   37 AAEKGITVAVRVLL---GAPTINVNARAPRNKKTALVLAARAGHLEAVQMLLGAGADISLADRRDWTAMHFAAWKGH 258
            A   G T AV  LL    +   NVNA  P  + TAL  +   G+LE V++L+  GAD+ LA+R  W+A+H AA+ GH
Sbjct:   27 AVRAGNTAAVHALLRTMNSCEFNVNAFGPEGQ-TALHQSVSDGNLELVKLLVRFGADVRLANRDGWSALHMAAFSGH 102          
BLAST of mRNA_P-canaliculata_contig101244.214.1 vs. uniprot
Match: A0A7D7LGS5_9NOSO (Ankyrin repeat domain-containing protein n=1 Tax=Nostoc edaphicum CCNP1411 TaxID=1472755 RepID=A0A7D7LGS5_9NOSO)

HSP 1 Score: 53.1 bits (126), Expect = 4.580e-6
Identity = 36/65 (55.38%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   28 LLRAAEKGITVAVRVLLGAPTINVNARAPRNK---KTALVLAARAGHLEAVQMLLGAGADISLAD 213
            LL AAE+G  VAVR  L     NVNAR  R K   +T L+LAA  GHLE V +LL AGADI+  D
Sbjct:  334 LLNAAEQGDVVAVRAWLSEGA-NVNARDQRRKTKNRTPLMLAASTGHLEVVNLLLDAGADINATD 397          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101244.214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNF9_9PHAE3.140e-1147.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A526RU79_9HYPH6.040e-841.98Ankyrin repeat domain-containing protein (Fragment... [more]
UPI001EE6334B1.420e-738.46ankyrin repeat, PH and SEC7 domain containing prot... [more]
A0A8I0KAH5_9RICK3.230e-743.18Ankyrin repeat domain-containing protein n=1 Tax=W... [more]
UPI001CFBE9065.710e-744.16notch-regulated ankyrin repeat-containing protein ... [more]
A0A8K0SHU8_9HYPO1.810e-638.67Glycerophosphoryl diester phosphodiesterase family... [more]
UPI001FEE97D03.640e-641.10ankyrin repeat domain-containing protein n=1 Tax=M... [more]
UPI00165810C73.740e-644.58ankyrin repeat domain-containing protein n=1 Tax=T... [more]
A0A670KBD5_PODMU4.040e-642.86NOTCH regulated ankyrin repeat protein n=1 Tax=Pod... [more]
A0A7D7LGS5_9NOSO4.580e-655.38Ankyrin repeat domain-containing protein n=1 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101244contigP-canaliculata_contig101244:557..832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue3.6e-10
Seed eggNOG ortholog2880.D7FHC0
KEGG koko:K21440
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-03_004020.1
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.342278-CDS-P-canaliculata_contig101244:556..8321622815586.342278-CDS-P-canaliculata_contig101244:556..832Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101244 557..832 +
1693494151.9566326-CDS-P-canaliculata_contig101244:556..8321693494151.9566326-CDS-P-canaliculata_contig101244:556..832Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101244 557..832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101244.214.1prot_P-canaliculata_contig101244.214.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101244 557..832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101244.214.1

>prot_P-canaliculata_contig101244.214.1 ID=prot_P-canaliculata_contig101244.214.1|Name=mRNA_P-canaliculata_contig101244.214.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=92bp
LTGHDGLPPLLRAAEKGITVAVRVLLGAPTINVNARAPRNKKTALVLAAR
AGHLEAVQMLLGAGADISLADRRDWTAMHFAAWKGHLCETR*
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mRNA from alignment at P-canaliculata_contig101244:557..832+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101244.214.1 ID=mRNA_P-canaliculata_contig101244.214.1|Name=mRNA_P-canaliculata_contig101244.214.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at P-canaliculata_contig101244:557..832+ (Pelvetia canaliculata dioecious)
TTGACAGGTCATGATGGCCTTCCACCGCTGCTCCGAGCGGCCGAGAAGGG GATCACGGTGGCAGTCAGGGTTCTGCTGGGAGCCCCGACCATCAACGTAA ACGCAAGAGCCCCCCGCAACAAGAAAACGGCCCTCGTGCTGGCGGCGCGA GCCGGGCACCTGGAGGCCGTGCAGATGCTCCTCGGAGCCGGAGCAGACAT TTCGCTCGCGGACAGGAGGGACTGGACGGCGATGCATTTCGCTGCGTGGA AGGGCCATTTATGTGAGACGAGATAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig101244:557..832+

>mRNA_P-canaliculata_contig101244.214.1 ID=mRNA_P-canaliculata_contig101244.214.1|Name=mRNA_P-canaliculata_contig101244.214.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at P-canaliculata_contig101244:557..832+ (Pelvetia canaliculata dioecious)
TTGACAGGTCATGATGGCCTTCCACCGCTGCTCCGAGCGGCCGAGAAGGG
GATCACGGTGGCAGTCAGGGTTCTGCTGGGAGCCCCGACCATCAACGTAA
ACGCAAGAGCCCCCCGCAACAAGAAAACGGCCCTCGTGCTGGCGGCGCGA
GCCGGGCACCTGGAGGCCGTGCAGATGCTCCTCGGAGCCGGAGCAGACAT
TTCGCTCGCGGACAGGAGGGACTGGACGGCGATGCATTTCGCTGCGTGGA
AGGGCCATTTATGTGAGACGAGATAGTTGACAGGTCATGATGGCCTTCCA
CCGCTGCTCCGAGCGGCCGAGAAGGGGATCACGGTGGCAGTCAGGGTTCT
GCTGGGAGCCCCGACCATCAACGTAAACGCAAGAGCCCCCCGCAACAAGA
AAACGGCCCTCGTGCTGGCGGCGCGAGCCGGGCACCTGGAGGCCGTGCAG
ATGCTCCTCGGAGCCGGAGCAGACATTTCGCTCGCGGACAGGAGGGACTG
GACGGCGATGCATTTCGCTGCGTGGAAGGGCCATTTATGTGAGACGAGAT
AG
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