mRNA_P-canaliculata_contig101172.206.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101172.206.1
Unique NamemRNA_P-canaliculata_contig101172.206.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101172.206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101172contigP-canaliculata_contig101172:10..1005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size996
Cds size693
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.3931074-CDS-P-canaliculata_contig101172:9..7021622815585.3931074-CDS-P-canaliculata_contig101172:9..702Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101172 10..702 -
1693494151.4248173-CDS-P-canaliculata_contig101172:9..7021693494151.4248173-CDS-P-canaliculata_contig101172:9..702Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101172 10..702 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.4108598-UTR-P-canaliculata_contig101172:702..10051622815585.4108598-UTR-P-canaliculata_contig101172:702..1005Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101172 703..1005 -
1693494151.4370682-UTR-P-canaliculata_contig101172:702..10051693494151.4370682-UTR-P-canaliculata_contig101172:702..1005Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101172 703..1005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101172.206.1prot_P-canaliculata_contig101172.206.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101172 10..702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101172.206.1

>prot_P-canaliculata_contig101172.206.1 ID=prot_P-canaliculata_contig101172.206.1|Name=mRNA_P-canaliculata_contig101172.206.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=231bp
MERIDKVLGKEQRDYCKNKIDSARKALTSYLKSNYYKKCETEHLEFIGES
LTDAKQLHLLFLKQLAPETHNLDSFLLTKEELNKWKSSTTNKEVIAFIKN
VIRGTETIGKIIEKKNVLEQLEDKSNLLKVIGITNDLLEVFKDLNENGED
ILDDLNRVINSNIIKNFNKGARNEFITSVSDISKQYNKTKFSKLTDWIIN
FNEDTRKAIRKTLKKNLKSSHKFMKTRLLVF
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mRNA from alignment at P-canaliculata_contig101172:10..1005-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101172.206.1 ID=mRNA_P-canaliculata_contig101172.206.1|Name=mRNA_P-canaliculata_contig101172.206.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=996bp|location=Sequence derived from alignment at P-canaliculata_contig101172:10..1005- (Pelvetia canaliculata dioecious)
TATGATATTGATATGGTAATTGGTATTCATGACCCTATAGGCATCGCTAT
AGCGATTACTAGTTCACTATCTCATTATTGGCTTGAATTAAATGCTTTAT
TAATATCTTTAAAAATAGGACAAAATACTGCAGAAGTAGAATCTCATTTA
CGTAAAGGTATAAATCCTGAATCTTTAGAAAACAATCCCTCTAAACTATC
AGAAGCTAAAGCACTTTTTAATTTAGCAAGTACCTGGAAGTCTGTCGCCT
TAATGAACGAAAAAAACAAAGAAGACCTAGTTGAAGCATGAGGAGGTTTG
AACATGGAACGTATTGATAAAGTTCTAGGGAAAGAACAGAGAGATTATTG
TAAAAATAAAATAGATAGTGCAAGAAAAGCTTTAACAAGCTATTTGAAAA
GTAATTATTATAAAAAATGTGAAACGGAACATCTAGAGTTCATAGGTGAA
AGTTTAACTGATGCAAAGCAATTACATCTGTTATTTTTAAAACAATTAGC
ACCAGAGACACATAATTTAGATAGCTTTTTACTTACTAAAGAAGAACTTA
ATAAATGGAAATCAAGTACAACTAATAAAGAGGTAATAGCGTTTATTAAA
AATGTTATTCGGGGTACAGAAACTATTGGTAAAATAATTGAAAAAAAGAA
TGTTTTAGAACAATTAGAAGATAAATCTAATCTTTTAAAAGTTATAGGAA
TTACAAATGATTTACTTGAAGTTTTTAAAGACTTAAACGAAAATGGAGAA
GATATTCTAGATGATTTAAATAGGGTTATTAATAGTAATATTATAAAAAA
CTTTAACAAAGGAGCTAGAAATGAATTTATAACTAGTGTTTCTGATATTT
CAAAACAATACAATAAAACTAAATTTAGTAAACTTACCGATTGGATTATT
AATTTTAATGAGGATACACGTAAGGCTATTCGTAAAACATTGAAAAAAAA
TCTTAAATCTTCTCATAAATTCATGAAAACTAGATTATTGGTTTTT
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Coding sequence (CDS) from alignment at P-canaliculata_contig101172:10..1005-

>mRNA_P-canaliculata_contig101172.206.1 ID=mRNA_P-canaliculata_contig101172.206.1|Name=mRNA_P-canaliculata_contig101172.206.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1386bp|location=Sequence derived from alignment at P-canaliculata_contig101172:10..1005- (Pelvetia canaliculata dioecious)
ATGGAACGTATTGATAAAGTTCTAGGGAAAGAACAGAGAGATTATTGTAA
AAATAAAATAGATAGTGCAAGAAAAGCTTTAACAAGCTATTTGAAAAGTA
ATTATTATAAAAAATGTGAAACGGAACATCTAGAGTTCATAGGTGAAAGT
TTAACTGATGCAAAGCAATTACATCTGTTATTTTTAAAACAATTAGCACC
AGAGACACATAATTTAGATAGCTTTTTACTTACTAAAGAAGAACTTAATA
AATGGAAATCAAGTACAACTAATAAAGAGGTAATAGCGTTTATTAAAAAT
GTTATTCGGGGTACAGAAACTATTGGTAAAATAATTGAAAAAAAGAATGT
TTTAGAACAATTAGAAGATAAATCTAATCTTTTAAAAGTTATAGGAATTA
CAAATGATTTACTTGAAGTTTTTAAAGACTTAAACGAAAATGGAGAAGAT
ATTCTAGATGATTTAAATAGGGTTATTAATAGTAATATTATAAAAAACTT
TAACAAAGGAGCTAGAAATGAATTTATAACTAGTGTTTCTGATATTTCAA
AACAATACAATAAAACTAAATTTAGTAAACTTACCGATTGGATTATTAAT
TTTAATGAGGATACACGTAAGGCTATTCGTAAAACATTGAAAAAAAATCT
TAAATCTTCTCATAAATTCATGAAAACTAGATTATTGGTTTTTATGGAAC
GTATTGATAAAGTTCTAGGGAAAGAACAGAGAGATTATTGTAAAAATAAA
ATAGATAGTGCAAGAAAAGCTTTAACAAGCTATTTGAAAAGTAATTATTA
TAAAAAATGTGAAACGGAACATCTAGAGTTCATAGGTGAAAGTTTAACTG
ATGCAAAGCAATTACATCTGTTATTTTTAAAACAATTAGCACCAGAGACA
CATAATTTAGATAGCTTTTTACTTACTAAAGAAGAACTTAATAAATGGAA
ATCAAGTACAACTAATAAAGAGGTAATAGCGTTTATTAAAAATGTTATTC
GGGGTACAGAAACTATTGGTAAAATAATTGAAAAAAAGAATGTTTTAGAA
CAATTAGAAGATAAATCTAATCTTTTAAAAGTTATAGGAATTACAAATGA
TTTACTTGAAGTTTTTAAAGACTTAAACGAAAATGGAGAAGATATTCTAG
ATGATTTAAATAGGGTTATTAATAGTAATATTATAAAAAACTTTAACAAA
GGAGCTAGAAATGAATTTATAACTAGTGTTTCTGATATTTCAAAACAATA
CAATAAAACTAAATTTAGTAAACTTACCGATTGGATTATTAATTTTAATG
AGGATACACGTAAGGCTATTCGTAAAACATTGAAAAAAAATCTTAAATCT
TCTCATAAATTCATGAAAACTAGATTATTGGTTTTT
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