prot_P-canaliculata_contig100974.185.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig100974.185.1
Unique Nameprot_P-canaliculata_contig100974.185.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length233
Homology
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: UPI00199F6E26 (GAF domain-containing protein n=1 Tax=Fuerstiella sp. TaxID=1936112 RepID=UPI00199F6E26)

HSP 1 Score: 173 bits (438), Expect = 1.680e-49
Identity = 101/231 (43.72%), Postives = 134/231 (58.01%), Query Frame = 0
Query:    2 AGLTSLINYVELWTPRAD--SLVLESAVSLESSQARSLPTGDRTTPKGQGIAGSAWQQEGAVIMQ-GPSAYLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGLAEGNAGLEIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPD--KDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDILRCETVEADS 227
            A   +L+ Y+E+W    D  ++ L+S   L  +      T DR    G+GIAG AW Q  AVI+Q  PS  L  +    G ++ ALIA P+     +L+V+V G+++G    EIW+RDDRDELS+S SYY GL + EF+SRYVRFPKGAGLPG+ WKTG PK+  APD      F+RSFD D        G+P+    G   SILLLLS    P+A+  +I     V  +S
Sbjct:   10 ANQGTLVQYIEVWHVEEDGQTMRLQSHARLRENVV-DFGTSDRQIRSGEGIAGMAWNQRHAVILQEAPSELLQRIGTQNGLNLTALIAYPIMRGHDVLSVVVFGISDGPGAFEIWSRDDRDELSISASYYSGLKNLEFMSRYVRFPKGAGLPGTVWKTGMPKL--APDLAHSASFMRSFDADETPLSTGFGLPVGSTAGHSESILLLLSSSTMPIARAFEIWTPHVVTEES 237          
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A2E0X6Z4_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E0X6Z4_9PLAN)

HSP 1 Score: 108 bits (270), Expect = 1.670e-24
Identity = 77/230 (33.48%), Postives = 112/230 (48.70%), Query Frame = 0
Query:    4 LTSLINYVELWTP--RADSLVLESAVSLESSQARSLPTGDRTTPKGQGIAGSAWQQEGAVIMQGPSA-YLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGLA---EGNAGLEIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDILRCETVEADS 227
            L+ L+  VE+W P    D LV       E  + R+    D T   G+G+ G+AW+    V+M   SA       AA  T V A +A+P +    L  ++V       E     E+W+R+ R+EL +S SYY  L  F  IS+YV+FP+G+GLPG  W +  PK+I    +   F+R+           + IPI R      S++L+LS    PLA   +I   E  E+DS
Sbjct:   18 LSGLLRAVEVWRPSDEGDHLVWGGGAYGELDELRAASV-DETFACGEGLPGAAWETRSPVVMHQLSAGNFKRADAARATGVTAGVALPCFRGDELQGIVVFLCGDDPEAQGAFEVWSRNHREELGLSASYYANLERFGLISQYVKFPRGSGLPGETWVSRFPKLISRLGQSKGFMRAAGAAADGLSTALSIPIMRSSLDLDSVVLMLSSARAPLAHAFEIWAREQ-ESDS 245          
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A518DG95_9BACT (Uncharacterized protein n=1 Tax=Pirellulimonas nuda TaxID=2528009 RepID=A0A518DG95_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 2.090e-17
Identity = 57/177 (32.20%), Postives = 85/177 (48.02%), Query Frame = 0
Query:   47 GQGIAGSAWQQEGAVIM---QGPSAYLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGLAEGN---AGLEIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDI 217
            G+G+ G AW+    V+M   Q       E+    G S  + IA+P      +  V+      G       E+W R+ RDEL++SGSYY  L  F  IS+YV+FPK AGLPG  W    PK++       +F+R+        +  +G+PI        S++ LLS    P+A  I++
Sbjct:   53 GEGLPGMAWRDRSPVVMHDLQAGEFLRAELAERVGLS--SGIAVPCLHRQQVAGVVTFLCDHGQDAEGAFEVWRRNQRDELALSGSYYANLDRFGLISQYVKFPKRAGLPGKVWSEQSPKLVGNLGSSKEFMRAAGARAEGLNAALGLPIFSSPLEIDSVVCLLSSARSPIASVIEV 227          
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A6P1T6H3_9RHOB (GAF domain-containing protein n=1 Tax=Rhodobacteraceae bacterium 9Alg 56 TaxID=2683284 RepID=A0A6P1T6H3_9RHOB)

HSP 1 Score: 87.4 bits (215), Expect = 8.450e-17
Identity = 62/219 (28.31%), Postives = 100/219 (45.66%), Query Frame = 0
Query:    6 SLINYVELWTPRADSLVLESAVSLESSQAR-SLPTGDRTTPKGQGIAGSAWQQEGAVIMQG-PSAYLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGLAEGN---AGLEIWT--RDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDI 217
            + I   E+W P      L+ A  L          +G      G+G+ G AW ++  ++++G   +Y     AA    + A IA+PV+    L  V+     + +     +E+W    D    L++   Y+     F +ISR+ RFPKG GLPG  W++GRPK+         F+RS     A     +G+P+S   G    I+ LLS +  P+A+  +I
Sbjct:   18 TFIRVTEVWVPDEADGRLKRAGGLYGDLTEFEAVSGKEIFALGEGLPGKAWAEQKPIVLKGFRGSYFKRTDAAEAAGLTAGIAMPVFAGSRLTAVVTFLFGDDSEHVGAVEVWAPGEDPSGPLALQDGYFGTADHFAWISRHTRFPKGMGLPGKTWESGRPKLFHDLGISHRFLRSDSAADAGMTAGLGLPVSAPSGD-THIVTLLSALGTPIARQFEI 235          
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A5C5ZQF7_9BACT (GAF domain-containing protein n=1 Tax=Pseudobythopirellula maris TaxID=2527991 RepID=A0A5C5ZQF7_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 1.080e-14
Identity = 66/215 (30.70%), Postives = 99/215 (46.05%), Query Frame = 0
Query:   11 VELWTPRADSLVLESAV-SLESSQARSLPTGDRTTPKGQGIAGSAWQQEGAVIMQG---PSAYLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGLAEGNAG----LEIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDI 217
            VE+W P      LE A  S    QA    +   T   G+G+ G AW     V++          D     AG +  + IAIP      L  V+V  L + N+      E+W R+DRDELS+   Y+  L  F  +S+YV+FP+GAGLPG   +   P++I       +F+R+           + +PI R      S++L+LS  + P+A   +I
Sbjct:   30 VEVWRPTESGDRLEWASGSYGPHQALQAESATITFAPGEGLPGMAWADRSPVLLDNLFQAGFVRDHTAREAGLT--SGIAIPCLSGERLHGVVVF-LCDHNSNAQGAFEVWRRNDRDELSLENGYHANLERFGKVSQYVKFPRGAGLPGKTREARFPQLIGNVGASKEFMRAAGAKAEGLASALSLPIMRGTLDIDSVVLMLSAAKTPIAHCFEI 241          
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A517TKD0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium MalM25 TaxID=2527998 RepID=A0A517TKD0_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 1.600e-13
Identity = 49/174 (28.16%), Postives = 83/174 (47.70%), Query Frame = 0
Query:   47 GQGIAGSAWQQEGAVIMQGPSAYLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGL--AEGNAG-LEIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDI 217
            G+G  G AW +   V   G   +               +AIP   E     VI L    +EG  G  E+W R++R EL +   +Y GL   E +SRY++FP+ AGLPG  W    P+++   +   +F+R       +    +G+P   +     ++LL+L+  E+P+A+ +++
Sbjct:   36 GEGAVGYAWAEGVPVFEHGDEGH-------------TTLAIPSLREQECRGVIALHCRESEGLCGAFEVWRRNERGELGIDKGWYPGLQRLEQVSRYIKFPRRAGLPGRVWDDRFPRVLGGLEDSKNFVRVAAARSERLGSALGVPFMGKPPELDAVLLMLNTRERPIARAMEV 196          
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A5C6ADU0_9BACT (Uncharacterized protein n=2 Tax=Botrimarina colliarenosi TaxID=2528001 RepID=A0A5C6ADU0_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 7.220e-11
Identity = 36/107 (33.64%), Postives = 59/107 (55.14%), Query Frame = 0
Query:  111 EIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDI 217
            E+W R++R EL ++ + Y GL   E I++YV+FP+ AGLPG  W    P+++ A      FIR       +    +GIP         ++LLLL+  + P+AK +++
Sbjct:   97 EVWRRNERGELGLAENLYAGLDRLEQITKYVKFPRRAGLPGRVWDDRFPRVLGALQDSKHFIRVAAARTEQLTSAVGIPFMGRPPELDAVLLLLNTKQTPIAKAMEV 203          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI00199F6E261.680e-4943.72GAF domain-containing protein n=1 Tax=Fuerstiella ... [more]
A0A2E0X6Z4_9PLAN1.670e-2433.48Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A518DG95_9BACT2.090e-1732.20Uncharacterized protein n=1 Tax=Pirellulimonas nud... [more]
A0A6P1T6H3_9RHOB8.450e-1728.31GAF domain-containing protein n=1 Tax=Rhodobactera... [more]
A0A5C5ZQF7_9BACT1.080e-1430.70GAF domain-containing protein n=1 Tax=Pseudobythop... [more]
A0A517TKD0_9BACT1.600e-1328.16Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A5C6ADU0_9BACT7.220e-1133.64Uncharacterized protein n=2 Tax=Botrimarina collia... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029016GAF-like domain superfamilyGENE3D3.30.450.40coord: 94..194
e-value: 1.0E-6
score: 30.4
NoneNo IPR availableSUPERFAMILY55781GAF domain-likecoord: 112..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100974contigP-canaliculata_contig100974:12..710 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100974.185.1mRNA_P-canaliculata_contig100974.185.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig100974 12..710 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig100974.185.1 ID=prot_P-canaliculata_contig100974.185.1|Name=mRNA_P-canaliculata_contig100974.185.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=233bp
RAGLTSLINYVELWTPRADSLVLESAVSLESSQARSLPTGDRTTPKGQGI
AGSAWQQEGAVIMQGPSAYLDEVVAAAGTSVKALIAIPVYCEFTLLNVIV
LGLAEGNAGLEIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLP
GSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASI
LLLLSDVEKPLAKHIDILRCETVEADSALGPKL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029016GAF-like_dom_sf