mRNA_P-canaliculata_contig100974.185.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: UPI00199F6E26 (GAF domain-containing protein n=1 Tax=Fuerstiella sp. TaxID=1936112 RepID=UPI00199F6E26) HSP 1 Score: 173 bits (438), Expect = 1.680e-49 Identity = 101/231 (43.72%), Postives = 134/231 (58.01%), Query Frame = 1 Query: 4 AGLTSLINYVELWTPRAD--SLVLESAVSLESSQARSLPTGDRTTPKGQGIAGSAWQQEGAVIMQ-GPSAYLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGLAEGNAGLEIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPD--KDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDILRCETVEADS 681 A +L+ Y+E+W D ++ L+S L + T DR G+GIAG AW Q AVI+Q PS L + G ++ ALIA P+ +L+V+V G+++G EIW+RDDRDELS+S SYY GL + EF+SRYVRFPKGAGLPG+ WKTG PK+ APD F+RSFD D G+P+ G SILLLLS P+A+ +I V +S Sbjct: 10 ANQGTLVQYIEVWHVEEDGQTMRLQSHARLRENVV-DFGTSDRQIRSGEGIAGMAWNQRHAVILQEAPSELLQRIGTQNGLNLTALIAYPIMRGHDVLSVVVFGISDGPGAFEIWSRDDRDELSISASYYSGLKNLEFMSRYVRFPKGAGLPGTVWKTGMPKL--APDLAHSASFMRSFDADETPLSTGFGLPVGSTAGHSESILLLLSSSTMPIARAFEIWTPHVVTEES 237
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A2E0X6Z4_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E0X6Z4_9PLAN) HSP 1 Score: 108 bits (270), Expect = 1.670e-24 Identity = 77/230 (33.48%), Postives = 112/230 (48.70%), Query Frame = 1 Query: 10 LTSLINYVELWTP--RADSLVLESAVSLESSQARSLPTGDRTTPKGQGIAGSAWQQEGAVIMQGPSA-YLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGLA---EGNAGLEIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDILRCETVEADS 681 L+ L+ VE+W P D LV E + R+ D T G+G+ G+AW+ V+M SA AA T V A +A+P + L ++V E E+W+R+ R+EL +S SYY L F IS+YV+FP+G+GLPG W + PK+I + F+R+ + IPI R S++L+LS PLA +I E E+DS Sbjct: 18 LSGLLRAVEVWRPSDEGDHLVWGGGAYGELDELRAASV-DETFACGEGLPGAAWETRSPVVMHQLSAGNFKRADAARATGVTAGVALPCFRGDELQGIVVFLCGDDPEAQGAFEVWSRNHREELGLSASYYANLERFGLISQYVKFPRGSGLPGETWVSRFPKLISRLGQSKGFMRAAGAAADGLSTALSIPIMRSSLDLDSVVLMLSSARAPLAHAFEIWAREQ-ESDS 245
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A518DG95_9BACT (Uncharacterized protein n=1 Tax=Pirellulimonas nuda TaxID=2528009 RepID=A0A518DG95_9BACT) HSP 1 Score: 89.4 bits (220), Expect = 2.090e-17 Identity = 57/177 (32.20%), Postives = 85/177 (48.02%), Query Frame = 1 Query: 139 GQGIAGSAWQQEGAVIM---QGPSAYLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGLAEGN---AGLEIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDI 651 G+G+ G AW+ V+M Q E+ G S + IA+P + V+ G E+W R+ RDEL++SGSYY L F IS+YV+FPK AGLPG W PK++ +F+R+ + +G+PI S++ LLS P+A I++ Sbjct: 53 GEGLPGMAWRDRSPVVMHDLQAGEFLRAELAERVGLS--SGIAVPCLHRQQVAGVVTFLCDHGQDAEGAFEVWRRNQRDELALSGSYYANLDRFGLISQYVKFPKRAGLPGKVWSEQSPKLVGNLGSSKEFMRAAGARAEGLNAALGLPIFSSPLEIDSVVCLLSSARSPIASVIEV 227
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A6P1T6H3_9RHOB (GAF domain-containing protein n=1 Tax=Rhodobacteraceae bacterium 9Alg 56 TaxID=2683284 RepID=A0A6P1T6H3_9RHOB) HSP 1 Score: 87.4 bits (215), Expect = 8.450e-17 Identity = 62/219 (28.31%), Postives = 100/219 (45.66%), Query Frame = 1 Query: 16 SLINYVELWTPRADSLVLESAVSLESSQAR-SLPTGDRTTPKGQGIAGSAWQQEGAVIMQG-PSAYLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGLAEGN---AGLEIWT--RDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDI 651 + I E+W P L+ A L +G G+G+ G AW ++ ++++G +Y AA + A IA+PV+ L V+ + + +E+W D L++ Y+ F +ISR+ RFPKG GLPG W++GRPK+ F+RS A +G+P+S G I+ LLS + P+A+ +I Sbjct: 18 TFIRVTEVWVPDEADGRLKRAGGLYGDLTEFEAVSGKEIFALGEGLPGKAWAEQKPIVLKGFRGSYFKRTDAAEAAGLTAGIAMPVFAGSRLTAVVTFLFGDDSEHVGAVEVWAPGEDPSGPLALQDGYFGTADHFAWISRHTRFPKGMGLPGKTWESGRPKLFHDLGISHRFLRSDSAADAGMTAGLGLPVSAPSGD-THIVTLLSALGTPIARQFEI 235
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A5C5ZQF7_9BACT (GAF domain-containing protein n=1 Tax=Pseudobythopirellula maris TaxID=2527991 RepID=A0A5C5ZQF7_9BACT) HSP 1 Score: 82.0 bits (201), Expect = 1.080e-14 Identity = 66/215 (30.70%), Postives = 99/215 (46.05%), Query Frame = 1 Query: 31 VELWTPRADSLVLESAV-SLESSQARSLPTGDRTTPKGQGIAGSAWQQEGAVIMQG---PSAYLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGLAEGNAG----LEIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDI 651 VE+W P LE A S QA + T G+G+ G AW V++ D AG + + IAIP L V+V L + N+ E+W R+DRDELS+ Y+ L F +S+YV+FP+GAGLPG + P++I +F+R+ + +PI R S++L+LS + P+A +I Sbjct: 30 VEVWRPTESGDRLEWASGSYGPHQALQAESATITFAPGEGLPGMAWADRSPVLLDNLFQAGFVRDHTAREAGLT--SGIAIPCLSGERLHGVVVF-LCDHNSNAQGAFEVWRRNDRDELSLENGYHANLERFGKVSQYVKFPRGAGLPGKTREARFPQLIGNVGASKEFMRAAGAKAEGLASALSLPIMRGTLDIDSVVLMLSAAKTPIAHCFEI 241
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A517TKD0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium MalM25 TaxID=2527998 RepID=A0A517TKD0_9BACT) HSP 1 Score: 78.2 bits (191), Expect = 1.600e-13 Identity = 49/174 (28.16%), Postives = 83/174 (47.70%), Query Frame = 1 Query: 139 GQGIAGSAWQQEGAVIMQGPSAYLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGL--AEGNAG-LEIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDI 651 G+G G AW + V G + +AIP E VI L +EG G E+W R++R EL + +Y GL E +SRY++FP+ AGLPG W P+++ + +F+R + +G+P + ++LL+L+ E+P+A+ +++ Sbjct: 36 GEGAVGYAWAEGVPVFEHGDEGH-------------TTLAIPSLREQECRGVIALHCRESEGLCGAFEVWRRNERGELGIDKGWYPGLQRLEQVSRYIKFPRRAGLPGRVWDDRFPRVLGGLEDSKNFVRVAAARSERLGSALGVPFMGKPPELDAVLLMLNTRERPIARAMEV 196
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A5C6ADU0_9BACT (Uncharacterized protein n=2 Tax=Botrimarina colliarenosi TaxID=2528001 RepID=A0A5C6ADU0_9BACT) HSP 1 Score: 70.9 bits (172), Expect = 7.220e-11 Identity = 36/107 (33.64%), Postives = 59/107 (55.14%), Query Frame = 1 Query: 331 EIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDI 651 E+W R++R EL ++ + Y GL E I++YV+FP+ AGLPG W P+++ A FIR + +GIP ++LLLL+ + P+AK +++ Sbjct: 97 EVWRRNERGELGLAENLYAGLDRLEQITKYVKFPRRAGLPGRVWDDRFPRVLGALQDSKHFIRVAAARTEQLTSAVGIPFMGRPPELDAVLLLLNTKQTPIAKAMEV 203 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100974.185.1 >prot_P-canaliculata_contig100974.185.1 ID=prot_P-canaliculata_contig100974.185.1|Name=mRNA_P-canaliculata_contig100974.185.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=233bp RAGLTSLINYVELWTPRADSLVLESAVSLESSQARSLPTGDRTTPKGQGIback to top mRNA from alignment at P-canaliculata_contig100974:12..710+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100974.185.1 ID=mRNA_P-canaliculata_contig100974.185.1|Name=mRNA_P-canaliculata_contig100974.185.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=699bp|location=Sequence derived from alignment at P-canaliculata_contig100974:12..710+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100974:12..710+ >mRNA_P-canaliculata_contig100974.185.1 ID=mRNA_P-canaliculata_contig100974.185.1|Name=mRNA_P-canaliculata_contig100974.185.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1398bp|location=Sequence derived from alignment at P-canaliculata_contig100974:12..710+ (Pelvetia canaliculata dioecious)back to top |