prot_P-canaliculata_contig10084.161.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10084.161.1
Unique Nameprot_P-canaliculata_contig10084.161.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length387
Homology
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BLAST of mRNA_P-canaliculata_contig10084.161.1 vs. uniprot
Match: D7FUM4_ECTSI (HTH_OrfB_IS605 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM4_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 7.750e-129
Identity = 241/413 (58.35%), Postives = 270/413 (65.38%), Query Frame = 0 
Query:    3 SEQKQQLTSLTDFWKEPWTASTWGTCSSQNPAAQGLQPSSWMYTRHTAHDDHGDSTDFDFGSYSSDCTSFS-ASSSGIPSPGASPPTLRQRWSSSSNNGLVDYHHXXXXQQXXXXXXXXQELRHLHGAVRGVSSPPTAPT--------MAPPPGLSPERYGHPPL------------------NPSAHSVLAPSRVLSSRSVTSRSSSIDSESS-ALGLYGGSCTGAGATS-----AFQIAGYRTVELLPTAQQRQTLQKWFGVVRWTHNRAVDALRVDPSSSAAELRTAVAKAEAEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGESVMAEPIGTAAQNKALKYRTRKDRLEQVVLRADGFQFGIPYPEYFGYAPLASSAPIPDRVQTDAILVRSTERFYLCI 382
            S ++QQ   L DFW+EPW   TW +  SQNPAAQGLQPS WMYT H    D   S DFD GS      SFS ASS   PSPG SPP    +W   S                       Q + H           P A T        M PPPGL+ ER+ HP                       + S+LA    + +RS TSRSSS++S++S AL LYGG+             AFQI GY+T+ELLPTAQQRQTLQKWFGVVRW HNRAVDALRVD S SA  LR AVA++E+EHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGE+VMAEP+GTAAQNKALKYRTRKDRLEQ+VLRADGFQ+GIPYP+YFGYAPLASS PIPDR+ +DAILVRSTERFYLCI
Sbjct:    2 STEQQQARGLDDFWQEPWAQDTWVSTISQNPAAQGLQPSGWMYTSHPGKQD---SLDFDLGS------SFSQASSEDPPSPG-SPPLNHGQWKRGSTASTAS----SCGSISVSGGAGHQPIEHXXXXXXXXXXAPIASTASLSSTLPMTPPPGLAHERFVHPAAAXXXXXXXXXXXXXXPHXXXXSQSLLA---TMGARSGTSRSSSVESDTSPALSLYGGAXXXXXXXXXXXPCAFQILGYQTLELLPTAQQRQTLQKWFGVVRWIHNRAVDALRVDSSVSATSLRAAVAESESEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGEAVMAEPLGTAAQNKALKYRTRKDRLEQIVLRADGFQYGIPYPDYFGYAPLASSVPIPDRLPSDAILVRSTERFYLCI 397
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10084.161.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUM4_ECTSI7.750e-12958.35HTH_OrfB_IS605 domain-containing protein n=2 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021027Transposase, putative, helix-turn-helix domainPFAMPF12323HTH_OrfB_IS605coord: 214..242
e-value: 9.9E-7
score: 28.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10084contigP-canaliculata_contig10084:3094..7022 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10084.161.1mRNA_P-canaliculata_contig10084.161.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10084 3094..7022 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10084.161.1 ID=prot_P-canaliculata_contig10084.161.1|Name=mRNA_P-canaliculata_contig10084.161.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=387bp
MTSEQKQQLTSLTDFWKEPWTASTWGTCSSQNPAAQGLQPSSWMYTRHTA
HDDHGDSTDFDFGSYSSDCTSFSASSSGIPSPGASPPTLRQRWSSSSNNG
LVDYHHHHHHQQHHQQHQQHQELRHLHGAVRGVSSPPTAPTMAPPPGLSP
ERYGHPPLNPSAHSVLAPSRVLSSRSVTSRSSSIDSESSALGLYGGSCTG
AGATSAFQIAGYRTVELLPTAQQRQTLQKWFGVVRWTHNRAVDALRVDPS
SSAAELRTAVAKAEAEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAA
AATGESVMAEPIGTAAQNKALKYRTRKDRLEQVVLRADGFQFGIPYPEYF
GYAPLASSAPIPDRVQTDAILVRSTERFYLCIPDTA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021027Transposase_put_HTH