Homology
BLAST of mRNA_P-canaliculata_contig10084.161.1 vs. uniprot
Match:
D7FUM4_ECTSI (HTH_OrfB_IS605 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM4_ECTSI)
HSP 1 Score: 385 bits (988), Expect = 7.750e-129
Identity = 241/413 (58.35%), Postives = 270/413 (65.38%), Query Frame = 1
Query: 7 SEQKQQLTSLTDFWKEPWTASTWGTCSSQNPAAQGLQPSSWMYTRHTAHDDHGDSTDFDFGSYSSDCTSFS-ASSSGIPSPGASPPTLRQRWSSSSNNGLVDYHHXXXXQQXXXXXXXXQELRHLHGAVRGVSSPPTAPT--------MAPPPGLSPERYGHPPL------------------NPSAHSVLAPSRVLSSRSVTSRSSSIDSESS-ALGLYGGSCTGAGATS-----AFQIAGYRTVELLPTAQQRQTLQKWFGVVRWTHNRAVDALRVDPSSSAAELRTAVAKAEAEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGESVMAEPIGTAAQNKALKYRTRKDRLEQVVLRADGFQFGIPYPEYFGYAPLASSAPIPDRVQTDAILVRSTERFYLCI 1146
S ++QQ L DFW+EPW TW + SQNPAAQGLQPS WMYT H D S DFD GS SFS ASS PSPG SPP +W S Q + H P A T M PPPGL+ ER+ HP + S+LA + +RS TSRSSS++S++S AL LYGG+ AFQI GY+T+ELLPTAQQRQTLQKWFGVVRW HNRAVDALRVD S SA LR AVA++E+EHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGE+VMAEP+GTAAQNKALKYRTRKDRLEQ+VLRADGFQ+GIPYP+YFGYAPLASS PIPDR+ +DAILVRSTERFYLCI
Sbjct: 2 STEQQQARGLDDFWQEPWAQDTWVSTISQNPAAQGLQPSGWMYTSHPGKQD---SLDFDLGS------SFSQASSEDPPSPG-SPPLNHGQWKRGSTASTAS----SCGSISVSGGAGHQPIEHXXXXXXXXXXAPIASTASLSSTLPMTPPPGLAHERFVHPAAAXXXXXXXXXXXXXXPHXXXXSQSLLA---TMGARSGTSRSSSVESDTSPALSLYGGAXXXXXXXXXXXPCAFQILGYQTLELLPTAQQRQTLQKWFGVVRWIHNRAVDALRVDSSVSATSLRAAVAESESEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGEAVMAEPLGTAAQNKALKYRTRKDRLEQIVLRADGFQYGIPYPDYFGYAPLASSVPIPDRLPSDAILVRSTERFYLCI 397
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10084.161.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 7.75e-129 / Id = 58.35 Sequence D7FUM4_ECTSI
Match Name E-value Identity Description
D7FUM4_ECTSI 7.750e-129 58.35 HTH_OrfB_IS605 domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description Transposase, putative, helix-turn-helix domain Ec32 ortholog Ec-26_002150.1 Exons 4 Model size 1161 Cds size 1161 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815581.9761171-CDS-P-canaliculata_contig10084:3093..3232 1622815581.9761171-CDS-P-canaliculata_contig10084:3093..3232 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10084 3094..3232 + 1693494149.5205624-CDS-P-canaliculata_contig10084:3093..3232 1693494149.5205624-CDS-P-canaliculata_contig10084:3093..3232 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10084 3094..3232 + 1622815581.998372-CDS-P-canaliculata_contig10084:4218..4766 1622815581.998372-CDS-P-canaliculata_contig10084:4218..4766 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10084 4219..4766 + 1693494149.5294724-CDS-P-canaliculata_contig10084:4218..4766 1693494149.5294724-CDS-P-canaliculata_contig10084:4218..4766 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10084 4219..4766 + 1622815582.0109074-CDS-P-canaliculata_contig10084:5468..5797 1622815582.0109074-CDS-P-canaliculata_contig10084:5468..5797 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10084 5469..5797 + 1693494149.5388079-CDS-P-canaliculata_contig10084:5468..5797 1693494149.5388079-CDS-P-canaliculata_contig10084:5468..5797 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10084 5469..5797 + 1622815582.0300467-CDS-P-canaliculata_contig10084:6877..7022 1622815582.0300467-CDS-P-canaliculata_contig10084:6877..7022 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10084 6878..7022 + 1693494149.5482159-CDS-P-canaliculata_contig10084:6877..7022 1693494149.5482159-CDS-P-canaliculata_contig10084:6877..7022 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10084 6878..7022 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10084.161.1
>prot_P-canaliculata_contig10084.161.1 ID=prot_P-canaliculata_contig10084.161.1|Name=mRNA_P-canaliculata_contig10084.161.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=387bp
MTSEQKQQLTSLTDFWKEPWTASTWGTCSSQNPAAQGLQPSSWMYTRHTA back to top mRNA from alignment at P-canaliculata_contig10084:3094..7022+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10084.161.1 ID=mRNA_P-canaliculata_contig10084.161.1|Name=mRNA_P-canaliculata_contig10084.161.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3929bp|location=Sequence derived from alignment at P-canaliculata_contig10084:3094..7022+ (Pelvetia canaliculata dioecious)ATGACCTCTGAGCAAAAGCAGCAGCTGACGAGTCTCACGGACTTCTGGAA
GGAACCTTGGACGGCGTCTACTTGGGGAACATGTAGCAGTCAGAACCCCG
CCGCTCAAGGCCTCCAGCCCTCCTCGTGGATGTATACAA GTAAGTTTTTT
TCTTTTTCTTATTTTTTTTTAACCTGTCGTTGGGCTTGAAGGGGCTTTGC
CTTGAACCCCTGTTGTTTTAAATCGTGCACCGCGGACCTCTTTACTAGAC
TAGTAATAATCAAAACATTATTATTTTTTGGGGGGAAGGGGTCTAGCTTG
TTCTAAATCTGCTGCGGATTTTTATATTTATAAAATAGAAGCGAACGCGT
CGCCGAGTCTTCTTGTGCTTGTCCCTCTCCCGACCGGAGTGGTGGTGGTG
GAAGGACAGGAAGAAGGCGGAATAGAACAATGAATTCGGCATCCGTTTCA
TTTTTCGTTTTTCAAGATCACGTGCGTGTCGGGCCGCGCGTGTGTCCGGC
CGATACCCGAGGTCCTAAAAAGGGACCAGCCTTCTCGTTCAGAATCCCAA
CAGCATGCTCTGTCGAGACAATCAGTAACGCTGTGACGATGACTGCTCTG
GAGGGTTCATTTCGCGTTCGCCCTCATCCGCGGGGATTTTCTCGTCGGGC
GCGTCCACCCTTGATCTTTTGCGCTCCCTCTGCAGCCGACTCTATCATTC
ACTCACCGCGCGATCTCCTGTCCCGCCCTACGGCAGAATCTGACCCTTCA
CAAGTCACATCTGTGGCGCATGATATTGCTTGTTATTAAAAATAGTGTAA
TTGCATAAGTCTTGTAAACAAAGTCGAAGCGCTACTCCTCACTCTCCCCT
AACCTCTCTCGCCGCCTCCGGAGGTTCTCGCGTGGAAGTCGCGCCCCGAC
ACACACAAGAAATGCGCCAAACCCCAACCCTCGCTCGTAGCTTCTCTTTC
ACCTTCTCGACCAAGATAAGCAGTAGGAACATACATGCGTCACACCATCA
TAATACCAGTTCGAGACAAACCAATTGGGGTTTCGCTCGCCAGGAATCGT
CCTACAAACACACTGCGTCCCTCTCTCAACGCCCGCATGCTCTTTTCCCC
CCCCTCCTCTTTCCGTCGCTCACAGGGCACACCGCCCACGACGACCACGG
TGACAGCACTGACTTCGACTTCGGGTCGTACTCGAGCGACTGCACTTCGT
TTTCGGCGTCGTCTTCCGGAATACCGTCTCCGGGAGCATCGCCCCCCACT
CTCCGCCAACGTTGGTCGAGCTCAAGCAACAACGGACTGGTCGACTACCA
CCACCACCATCACCACCAGCAGCACCATCAACAGCATCAGCAGCATCAGG
AGCTACGTCACCTTCATGGTGCAGTTCGCGGGGTTTCATCGCCACCGACC
GCCCCGACGATGGCTCCCCCGCCGGGGCTCTCGCCCGAACGATACGGGCA
CCCCCCCCTCAACCCCTCCGCGCACTCAGTACTTGCGCCCTCGCGCGTGC
TCAGTAGTCGGTCGGTAACGAGCCGATCTTCAAGCATTGATTCCGAGAGC
TCGGCGCTTGGACTATACGGAGGTAGCTGCACGGGGGCGGGCGCTACTAG
CGCCTTCCAAATCGCCGGCTACCGGACCGTGGAACTGCTCCCGACGGCTC
AGCAGCGGCAAACACTCCAGAAG GTACGTAACATGCAGATCAAAAGGCAA
GGGGTGTTTTCTTCTCCCTTAGTACCATGAAGTATTTCGAGGTCAAAACA
AACGCATACAGTATAGTAGTGATTCTGCAATTAAGAAAAGTTAGAGCCGA
TATTTTCCTATTTCACACATGTACTTATGAAACGCTACATTTTGATCTGC
AGAACTGTTCATTGAAGGAGCACAACATCGAGATTATCTGCGAGCACACC
CAAAGAATGGTCTGAACCCGTGGCGAGTAGTGTCGAATGATAGGTCGTCT
CTTCCGTGGGTGGAACCGTTGTTCAACCATTCCGACTTTAAACACATGAG
CTTAGCACCGATGTGTTCAAACTGCTGAAGGAATGAAGCAAAGCAATTCG
ATGCGACAATCCAGTAGACCTTGGAGAAATAATCTGGATCCGCTCCGAGT
TGTTCCCGCTTCTCAACCTCAACACGCTTGATTTTTTTGCAAAGAACTTA
ATCGACTAGAATTCAATCGACGTTGAAGGTGGCCTTCTCTTAAAATCCAA
GTATACTCCACACCTTTCCACGAAGTTGAAAGTATAACATCTCCGACGAA
TCCATCTGCAATGCTTCACCCCTTTCTCTCTTCCTCTCTCTCTGATTCAT
GTCGTCCCTTCAACCTGCTCCCCCTCCGTCTCCCACCCTTATATTATCTG
CGGTGGCTTCCCTCGTTACAATCAGTGGTTTGGAGTCGTTCGCTGGACAC
ACAATCGCGCCGTCGATGCCCTTCGCGTCGATCCCAGCTCATCAGCCGCT
GAGCTCCGCACCGCCGTCGCCAAGGCTGAGGCCGAGCACGAGTGGGCGGC
TGCCGTGCCCCTCGCTATCCGCGACGCAACGGTGGCGCAGCTTGTGGGCG
CGCTGCACCTAGCCCAGCGGTCGGCGGAAGTGGCTGCTGCGGCCACGGGA
GAGAGCGTGATGGCGGAGCCTATCGGGACGGCGGCGCAGAACAAGGCGCT
CAAGTACCGCACGCGGAAGGACAGGCTAGAGCAAGTAGTTCTCAGGGCCG
ACGG GTGAGCACGCAGTTGTGGCTTTAGGAGAGGGTTTATCGGCTTGGAT
GTGCATTATTGACCCTCGCCTTTAGCCGTGGAGGCCTCCACAATCTTCCC
CACGATGTCAACGCGCTTCTGTTTTTAGCACCCTGTGACACAACGGTAAG
CTCCGCTGACTGCCTTTCGAACATTCTCCCGCTTTGATATCGTTGTGATT
TTTTAGAACCCCTTTCGTTCATGTGCTATCGCGGCTAAGATTGTGTTCAG
TGGCATCACTTGACCCGGTATTATTGTGTTGTGTTGAAGTTTTCCTCCTT
CGTGACCCCCAAAAGAGCAGAGACTGGCCTCTTCGTCATCCGGCCGCTGT
TCAGGTGTTGCCCGCCGTACGTGAGCCCCCGAACGTCGCAGTTCCTCCTT
CCGAAATAGAAGTTGGCGTTGAGAAGTGACATGCGCGAGGGAGGCTTTCA
TAGAAATATCTTTAGTGGCCTCATTTTGCGGTGTAGACGTGTATGGGAGT
CATTCCCACCCACTTTTGTGTGCCGGTATTAATCAATCGAGAATCCCCTC
GATAGTGTAATGTCTGCCCTTGGTGGCAAGAAGGAACACCCGCCACCATC
AGTTGATGTCGTCTGAAAGATGGCTCGCCGCAGTACACACAAAACAAAAA
CAAAAAACGTTTTATATTTTTGCGAGCCAAAAAACAATTGTTTAATCTCG
GATAACCTGTGACGGCGTTTCACTCTCGGGGGCAGTGGTTTTCTGTCAAA
GTTCGCGACTTTAAACGTTTCCGGATTCTTTAGGATTTGAGAAGCCACGT
TTTCCCGTTCCCCGAACTTCGTATGGCTTCTTAATGGGACCCCCGTATCG
TTGCATCGCCCCACGGATTGGGTTTTATAGTCAGAATCGAAACCTTTTCT
GTGGCACTCTCACATTTTCCAAGACCAGTAGCTCCACAATCCGGAACTCT
CGCTTACACGTCACACGTGCTACACGTGCCACGCGTGCGGTGACTCAATC
CTCCCTGTCGCTGATCGACACGTGATCCCACCGCTAATTTCCCTTCCCTT
CTCGCCTTGTTTGACAATTTACTGATGACCACAGGTTCCAGTTCGGGATA
CCTTACCCGGAGTACTTCGGCTACGCGCCGCTTGCCTCGTCCGCCCCTAT
TCCAGACCGGGTGCAGACCGACGCAATTCTCGTCCGTAGCACCGAGCGAT
TCTACCTCTGCATCCCGGACACGGCCTGA back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10084:3094..7022+
>mRNA_P-canaliculata_contig10084.161.1 ID=mRNA_P-canaliculata_contig10084.161.1|Name=mRNA_P-canaliculata_contig10084.161.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2322bp|location=Sequence derived from alignment at P-canaliculata_contig10084:3094..7022+ (Pelvetia canaliculata dioecious) back to top