prot_P-canaliculata_contig100479.109.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig100479.109.1
Unique Nameprot_P-canaliculata_contig100479.109.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length50
Homology
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BLAST of mRNA_P-canaliculata_contig100479.109.1 vs. uniprot
Match: A0A2Z2NW59_9GAMM (Uncharacterized protein n=1 Tax=Granulosicoccus antarcticus IMCC3135 TaxID=1192854 RepID=A0A2Z2NW59_9GAMM)

HSP 1 Score: 59.7 bits (143), Expect = 4.060e-9
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 0 
Query:   12 DARSIALGGAVIANGKGVHGALANPASMMAMQRRGETTH 50
            DARSIALGG+VIANG+GVHGA+ NPAS+MAMQ+R ET H
Sbjct:   59 DARSIALGGSVIANGQGVHGAVDNPASLMAMQQRKETFH 97
[Close]
BLAST of mRNA_P-canaliculata_contig100479.109.1 vs. uniprot
Match: A0A848U6V8_9GAMM (Conjugal transfer protein TraF n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848U6V8_9GAMM)

HSP 1 Score: 58.9 bits (141), Expect = 7.600e-9
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 0 
Query:   12 DARSIALGGAVIANGKGVHGALANPASMMAMQRRGETTH 50
            DARSIALGG+VIANG+GVHGAL NPAS+MAM+RR E  H
Sbjct:   55 DARSIALGGSVIANGQGVHGALENPASLMAMKRRKEKFH 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100479.109.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2Z2NW59_9GAMM4.060e-979.49Uncharacterized protein n=1 Tax=Granulosicoccus an... [more]
A0A848U6V8_9GAMM7.600e-979.49Conjugal transfer protein TraF n=1 Tax=Granulosico... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100479contigP-canaliculata_contig100479:876..1025 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100479.109.1mRNA_P-canaliculata_contig100479.109.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig100479 876..1025 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig100479.109.1 ID=prot_P-canaliculata_contig100479.109.1|Name=mRNA_P-canaliculata_contig100479.109.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=50bp
TLCANSVAAASDARSIALGGAVIANGKGVHGALANPASMMAMQRRGETTH
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