Homology
BLAST of mRNA_P-canaliculata_contig100479.109.1 vs. uniprot
Match:
A0A2Z2NW59_9GAMM (Uncharacterized protein n=1 Tax=Granulosicoccus antarcticus IMCC3135 TaxID=1192854 RepID=A0A2Z2NW59_9GAMM)
HSP 1 Score: 59.7 bits (143), Expect = 4.060e-9
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 1
Query: 34 DARSIALGGAVIANGKGVHGALANPASMMAMQRRGETTH 150
DARSIALGG+VIANG+GVHGA+ NPAS+MAMQ+R ET H
Sbjct: 59 DARSIALGGSVIANGQGVHGAVDNPASLMAMQQRKETFH 97
BLAST of mRNA_P-canaliculata_contig100479.109.1 vs. uniprot
Match:
A0A848U6V8_9GAMM (Conjugal transfer protein TraF n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848U6V8_9GAMM)
HSP 1 Score: 58.9 bits (141), Expect = 7.600e-9
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1
Query: 34 DARSIALGGAVIANGKGVHGALANPASMMAMQRRGETTH 150
DARSIALGG+VIANG+GVHGAL NPAS+MAM+RR E H
Sbjct: 55 DARSIALGGSVIANGQGVHGALENPASLMAMKRRKEKFH 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100479.109.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.06e-9 / Id = 79.49 Expect = 7.60e-9 / Id = 79.49 Sequence A0A2Z2NW59_9GAMM A0A848U6V8_9GAMM back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category no signal peptide or anchor Exons 1 Model size 150 Cds size 150 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815578.1548526-CDS-P-canaliculata_contig100479:875..1025 1622815578.1548526-CDS-P-canaliculata_contig100479:875..1025 Pelvetia canaliculata dioecious CDS P-canaliculata_contig100479 876..1025 + 1693494147.5666304-CDS-P-canaliculata_contig100479:875..1025 1693494147.5666304-CDS-P-canaliculata_contig100479:875..1025 Pelvetia canaliculata dioecious CDS P-canaliculata_contig100479 876..1025 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100479.109.1
>prot_P-canaliculata_contig100479.109.1 ID=prot_P-canaliculata_contig100479.109.1|Name=mRNA_P-canaliculata_contig100479.109.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=50bp
TLCANSVAAASDARSIALGGAVIANGKGVHGALANPASMMAMQRRGETTH back to top mRNA from alignment at P-canaliculata_contig100479:876..1025+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100479.109.1 ID=mRNA_P-canaliculata_contig100479.109.1|Name=mRNA_P-canaliculata_contig100479.109.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at P-canaliculata_contig100479:876..1025+ (Pelvetia canaliculata dioecious)ACGCTTTGCGCAAATTCGGTTGCTGCAGCGAGCGATGCCCGTTCAATAGC
ATTGGGCGGTGCAGTAATCGCCAATGGCAAGGGTGTGCACGGAGCACTGG
CCAATCCGGCGTCCATGATGGCCATGCAGCGCCGCGGCGAAACCACGCAC
back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100479:876..1025+
>mRNA_P-canaliculata_contig100479.109.1 ID=mRNA_P-canaliculata_contig100479.109.1|Name=mRNA_P-canaliculata_contig100479.109.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at P-canaliculata_contig100479:876..1025+ (Pelvetia canaliculata dioecious) back to top