mRNA_P-canaliculata_contig100408.104.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100408.104.1
Unique NamemRNA_P-canaliculata_contig100408.104.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig100408.104.1 vs. uniprot
Match: A0A517Y623_9BACT (Uncharacterized protein n=1 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517Y623_9BACT)

HSP 1 Score: 79.7 bits (195), Expect = 2.810e-15
Identity = 55/178 (30.90%), Postives = 98/178 (55.06%), Query Frame = 1 
Query:   19 EDATLPFISGIILAVIFFLLFINSRNKIMLYLAIGITLLAGGIFACEQLVVTDREEVAMIVSDLADQVQNNNVQGVVKRLSPKYQETIRRAEAEMPNYHFSMCRLSGVPRFK-DDRTNPNKKIVSFVV----NFRASSKRIKE-KIPGQRKVTLTFERDAAGEWKVTDYSHSDPRENV 534
              A L F++  + A++ F+ +I +  K +LYL   + +L  G+   E+  ++DRE +   +  +A +++ N+   V   + PK  +   +AEAE+P Y FS CR++ +   K +   +P K  V F +    +FR+ +  + E KIP  R + L+ E+D  G+WKVTDY H+ P + +
Sbjct:    9 NPALLVFLAAFV-ALVVFVAWIKTGRKEVLYLLGMVIVLDVGLVMYERFTISDREAIQATLLRVARELETNDRAAVYAAIHPKAVDQRMQAEAELPKYTFSECRITKIHETKVEGNQSPKKATVEFNIIASGSFRSGADVLGETKIP--RFIRLSLEQDTDGQWKVTDYYHASPEQAI 183
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100408.104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A517Y623_9BACT2.810e-1530.90Uncharacterized protein n=1 Tax=Anatilimnocola agg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100408contigP-canaliculata_contig100408:243..785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size543
Cds size543
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.6028874-CDS-P-canaliculata_contig100408:242..7851622815577.6028874-CDS-P-canaliculata_contig100408:242..785Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100408 243..785 -
1693494147.1982815-CDS-P-canaliculata_contig100408:242..7851693494147.1982815-CDS-P-canaliculata_contig100408:242..785Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100408 243..785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100408.104.1prot_P-canaliculata_contig100408.104.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100408 243..785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100408.104.1

>prot_P-canaliculata_contig100408.104.1 ID=prot_P-canaliculata_contig100408.104.1|Name=mRNA_P-canaliculata_contig100408.104.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=181bp
MPSWFSEDATLPFISGIILAVIFFLLFINSRNKIMLYLAIGITLLAGGIF
ACEQLVVTDREEVAMIVSDLADQVQNNNVQGVVKRLSPKYQETIRRAEAE
MPNYHFSMCRLSGVPRFKDDRTNPNKKIVSFVVNFRASSKRIKEKIPGQR
KVTLTFERDAAGEWKVTDYSHSDPRENVRL*
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mRNA from alignment at P-canaliculata_contig100408:243..785-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100408.104.1 ID=mRNA_P-canaliculata_contig100408.104.1|Name=mRNA_P-canaliculata_contig100408.104.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at P-canaliculata_contig100408:243..785- (Pelvetia canaliculata dioecious)
ATGCCTTCCTGGTTCTCCGAAGATGCCACGTTACCTTTTATCAGCGGCAT
CATTCTTGCCGTCATCTTCTTCCTACTGTTCATTAACTCTCGCAACAAAA
TCATGCTCTACCTTGCAATCGGAATTACGCTGCTGGCTGGAGGCATCTTT
GCCTGCGAACAGCTAGTGGTGACCGACCGTGAAGAAGTCGCGATGATTGT
CAGTGACTTGGCAGACCAAGTTCAGAACAACAACGTTCAGGGTGTCGTGA
AGCGACTGAGCCCAAAGTATCAAGAAACGATTCGCCGAGCTGAAGCCGAG
ATGCCGAATTATCATTTCAGCATGTGTCGTCTGTCCGGCGTTCCCCGATT
CAAAGATGATAGAACGAACCCAAATAAAAAGATTGTTTCGTTTGTCGTCA
ATTTTCGGGCGAGTTCAAAGAGAATTAAGGAGAAAATTCCCGGCCAAAGA
AAAGTGACGCTGACTTTTGAAAGGGATGCCGCTGGAGAATGGAAAGTGAC
TGATTACTCTCACAGCGATCCTCGTGAGAACGTGCGGCTATAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig100408:243..785-

>mRNA_P-canaliculata_contig100408.104.1 ID=mRNA_P-canaliculata_contig100408.104.1|Name=mRNA_P-canaliculata_contig100408.104.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at P-canaliculata_contig100408:243..785- (Pelvetia canaliculata dioecious)
ATGCCTTCCTGGTTCTCCGAAGATGCCACGTTACCTTTTATCAGCGGCAT
CATTCTTGCCGTCATCTTCTTCCTACTGTTCATTAACTCTCGCAACAAAA
TCATGCTCTACCTTGCAATCGGAATTACGCTGCTGGCTGGAGGCATCTTT
GCCTGCGAACAGCTAGTGGTGACCGACCGTGAAGAAGTCGCGATGATTGT
CAGTGACTTGGCAGACCAAGTTCAGAACAACAACGTTCAGGGTGTCGTGA
AGCGACTGAGCCCAAAGTATCAAGAAACGATTCGCCGAGCTGAAGCCGAG
ATGCCGAATTATCATTTCAGCATGTGTCGTCTGTCCGGCGTTCCCCGATT
CAAAGATGATAGAACGAACCCAAATAAAAAGATTGTTTCGTTTGTCGTCA
ATTTTCGGGCGAGTTCAAAGAGAATTAAGGAGAAAATTCCCGGCCAAAGA
AAAGTGACGCTGACTTTTGAAAGGGATGCCGCTGGAGAATGGAAAGTGAC
TGATTACTCTCACAGCGATCCTCGTGAGAACGTGCGGCTATAAATGCCTT
CCTGGTTCTCCGAAGATGCCACGTTACCTTTTATCAGCGGCATCATTCTT
GCCGTCATCTTCTTCCTACTGTTCATTAACTCTCGCAACAAAATCATGCT
CTACCTTGCAATCGGAATTACGCTGCTGGCTGGAGGCATCTTTGCCTGCG
AACAGCTAGTGGTGACCGACCGTGAAGAAGTCGCGATGATTGTCAGTGAC
TTGGCAGACCAAGTTCAGAACAACAACGTTCAGGGTGTCGTGAAGCGACT
GAGCCCAAAGTATCAAGAAACGATTCGCCGAGCTGAAGCCGAGATGCCGA
ATTATCATTTCAGCATGTGTCGTCTGTCCGGCGTTCCCCGATTCAAAGAT
GATAGAACGAACCCAAATAAAAAGATTGTTTCGTTTGTCGTCAATTTTCG
GGCGAGTTCAAAGAGAATTAAGGAGAAAATTCCCGGCCAAAGAAAAGTGA
CGCTGACTTTTGAAAGGGATGCCGCTGGAGAATGGAAAGTGACTGATTAC
TCTCACAGCGATCCTCGTGAGAACGTGCGGCTATAA
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