mRNA_P-canaliculata_contig100390.99.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100390.99.1
Unique NamemRNA_P-canaliculata_contig100390.99.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig100390.99.1 vs. uniprot
Match: A0A2E0QXA7_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E0QXA7_9BACT)

HSP 1 Score: 117 bits (294), Expect = 7.190e-26
Identity = 88/299 (29.43%), Postives = 147/299 (49.16%), Query Frame = 1 
Query:    1 FVGLLSATPIFLLLLNGPIFRFAAKKGLAIYAEKNGLEHQATITGSLWSGPSITDLSLTPEIEATGPVRKLTAKEATIDYSIPALISDGP-LGMLEKLALKQVTLDLVLKEKTEEEKAAEPPKDPDKKPFDPNTLWNLLAADFEIEDVNVSITTGEKTTIIEGFTLVLPPGGTGKIALGKLTLPNGKGSDGFTAPLTSTGDSLTIGDGIQVIDPVRIRSLVLQKEITPILSGQIDL--AGGTLDLGFTRSREISAKLSSGAIDLTKFLPENPPVSTTISA----FNATFSGDFKDPSTW 876
            FVGL+    + LL LNGP FR   K      AEK G+E   TI GS+W G SI ++ L  +     P+  L  +EAT+DY    LI+     G LE + +++ T+++ L E + ++K  +  K    +P D +  WNLL A+F + ++++ I  G+K+  I+ F+L   PG  G+  +  L LP  +     +A L     S+++    Q+     ++SL + +    +  G+ D   AGG     F+ + + S K+  G   +   +P    +   +       +  F GDF++PSTW
Sbjct:   39 FVGLI----VLLLFLNGPGFRIFGKAIALNLAEKQGIEGDFTIDGSIWGGFSIGNVELEGK---ENPLVSLKLEEATVDYDTWGLITSATTFGWLELVRIQKATVEIDLPEPSGDKKKPKEQKKSQAEPKDFSPFWNLLDAEFALAEIDLVIKQGDKSYRIDNFSLQSNPGEDGRFTITGLELPGNEPVSPISAVLQKDEHSVSL-QSWQIGSTTSLQSLTVAESKPGVFDGEADFKFAGGKFSANFSSAGKASLKMHRGTTFVLSEIPAGGEIQAKLGGRVTDLDLRFDGDFENPSTW 329
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100390.99.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E0QXA7_9BACT7.190e-2629.43Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100390contigP-canaliculata_contig100390:152..1027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size876
Cds size876
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.3285468-CDS-P-canaliculata_contig100390:151..10271622815577.3285468-CDS-P-canaliculata_contig100390:151..1027Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100390 152..1027 -
1693494147.0460708-CDS-P-canaliculata_contig100390:151..10271693494147.0460708-CDS-P-canaliculata_contig100390:151..1027Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100390 152..1027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100390.99.1prot_P-canaliculata_contig100390.99.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100390 152..1027 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100390.99.1

>prot_P-canaliculata_contig100390.99.1 ID=prot_P-canaliculata_contig100390.99.1|Name=mRNA_P-canaliculata_contig100390.99.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=292bp
FVGLLSATPIFLLLLNGPIFRFAAKKGLAIYAEKNGLEHQATITGSLWSG
PSITDLSLTPEIEATGPVRKLTAKEATIDYSIPALISDGPLGMLEKLALK
QVTLDLVLKEKTEEEKAAEPPKDPDKKPFDPNTLWNLLAADFEIEDVNVS
ITTGEKTTIIEGFTLVLPPGGTGKIALGKLTLPNGKGSDGFTAPLTSTGD
SLTIGDGIQVIDPVRIRSLVLQKEITPILSGQIDLAGGTLDLGFTRSREI
SAKLSSGAIDLTKFLPENPPVSTTISAFNATFSGDFKDPSTW
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mRNA from alignment at P-canaliculata_contig100390:152..1027-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100390.99.1 ID=mRNA_P-canaliculata_contig100390.99.1|Name=mRNA_P-canaliculata_contig100390.99.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=876bp|location=Sequence derived from alignment at P-canaliculata_contig100390:152..1027- (Pelvetia canaliculata dioecious)
TTTGTCGGTCTCCTCAGCGCGACCCCGATTTTTCTACTGCTGCTGAACGG
CCCGATCTTCCGTTTTGCCGCAAAAAAAGGCCTCGCGATCTACGCTGAGA
AAAACGGTCTCGAGCACCAGGCCACCATCACCGGCTCGCTCTGGTCCGGC
CCCTCCATTACCGACCTCTCGCTCACCCCCGAGATCGAAGCCACCGGCCC
CGTCCGTAAGCTCACGGCTAAGGAAGCCACGATCGACTACAGCATCCCCG
CCCTCATCAGCGATGGCCCACTCGGGATGCTGGAAAAGCTCGCGCTGAAA
CAGGTCACCCTTGATCTCGTCCTCAAAGAAAAGACCGAAGAAGAGAAAGC
CGCCGAGCCCCCCAAGGACCCGGATAAAAAACCTTTCGATCCAAATACCC
TCTGGAATCTCCTCGCCGCCGATTTCGAGATCGAAGACGTGAATGTCTCC
ATCACCACTGGCGAAAAGACCACCATCATCGAAGGCTTCACCCTCGTCCT
TCCCCCCGGCGGCACCGGTAAGATCGCCCTCGGCAAGCTCACCCTCCCCA
ATGGCAAAGGCTCCGATGGTTTTACCGCGCCCCTCACATCCACCGGCGAT
TCTCTCACCATCGGTGATGGCATCCAGGTCATCGATCCCGTCCGCATCCG
CTCGCTCGTTCTCCAAAAAGAAATCACCCCCATCCTGTCCGGGCAGATCG
ACCTCGCCGGAGGCACCCTCGACCTCGGCTTCACCCGTTCCCGCGAAATC
TCGGCCAAGTTGAGTTCCGGAGCCATTGATCTCACGAAATTCCTCCCAGA
AAACCCTCCCGTTTCCACCACCATCAGCGCCTTCAACGCTACTTTCTCCG
GCGACTTCAAAGACCCCTCCACCTGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig100390:152..1027-

>mRNA_P-canaliculata_contig100390.99.1 ID=mRNA_P-canaliculata_contig100390.99.1|Name=mRNA_P-canaliculata_contig100390.99.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1752bp|location=Sequence derived from alignment at P-canaliculata_contig100390:152..1027- (Pelvetia canaliculata dioecious)
TTTGTCGGTCTCCTCAGCGCGACCCCGATTTTTCTACTGCTGCTGAACGG
CCCGATCTTCCGTTTTGCCGCAAAAAAAGGCCTCGCGATCTACGCTGAGA
AAAACGGTCTCGAGCACCAGGCCACCATCACCGGCTCGCTCTGGTCCGGC
CCCTCCATTACCGACCTCTCGCTCACCCCCGAGATCGAAGCCACCGGCCC
CGTCCGTAAGCTCACGGCTAAGGAAGCCACGATCGACTACAGCATCCCCG
CCCTCATCAGCGATGGCCCACTCGGGATGCTGGAAAAGCTCGCGCTGAAA
CAGGTCACCCTTGATCTCGTCCTCAAAGAAAAGACCGAAGAAGAGAAAGC
CGCCGAGCCCCCCAAGGACCCGGATAAAAAACCTTTCGATCCAAATACCC
TCTGGAATCTCCTCGCCGCCGATTTCGAGATCGAAGACGTGAATGTCTCC
ATCACCACTGGCGAAAAGACCACCATCATCGAAGGCTTCACCCTCGTCCT
TCCCCCCGGCGGCACCGGTAAGATCGCCCTCGGCAAGCTCACCCTCCCCA
ATGGCAAAGGCTCCGATGGTTTTACCGCGCCCCTCACATCCACCGGCGAT
TCTCTCACCATCGGTGATGGCATCCAGGTCATCGATCCCGTCCGCATCCG
CTCGCTCGTTCTCCAAAAAGAAATCACCCCCATCCTGTCCGGGCAGATCG
ACCTCGCCGGAGGCACCCTCGACCTCGGCTTCACCCGTTCCCGCGAAATC
TCGGCCAAGTTGAGTTCCGGAGCCATTGATCTCACGAAATTCCTCCCAGA
AAACCCTCCCGTTTCCACCACCATCAGCGCCTTCAACGCTACTTTCTCCG
GCGACTTCAAAGACCCCTCCACCTGGTTTGTCGGTCTCCTCAGCGCGACC
CCGATTTTTCTACTGCTGCTGAACGGCCCGATCTTCCGTTTTGCCGCAAA
AAAAGGCCTCGCGATCTACGCTGAGAAAAACGGTCTCGAGCACCAGGCCA
CCATCACCGGCTCGCTCTGGTCCGGCCCCTCCATTACCGACCTCTCGCTC
ACCCCCGAGATCGAAGCCACCGGCCCCGTCCGTAAGCTCACGGCTAAGGA
AGCCACGATCGACTACAGCATCCCCGCCCTCATCAGCGATGGCCCACTCG
GGATGCTGGAAAAGCTCGCGCTGAAACAGGTCACCCTTGATCTCGTCCTC
AAAGAAAAGACCGAAGAAGAGAAAGCCGCCGAGCCCCCCAAGGACCCGGA
TAAAAAACCTTTCGATCCAAATACCCTCTGGAATCTCCTCGCCGCCGATT
TCGAGATCGAAGACGTGAATGTCTCCATCACCACTGGCGAAAAGACCACC
ATCATCGAAGGCTTCACCCTCGTCCTTCCCCCCGGCGGCACCGGTAAGAT
CGCCCTCGGCAAGCTCACCCTCCCCAATGGCAAAGGCTCCGATGGTTTTA
CCGCGCCCCTCACATCCACCGGCGATTCTCTCACCATCGGTGATGGCATC
CAGGTCATCGATCCCGTCCGCATCCGCTCGCTCGTTCTCCAAAAAGAAAT
CACCCCCATCCTGTCCGGGCAGATCGACCTCGCCGGAGGCACCCTCGACC
TCGGCTTCACCCGTTCCCGCGAAATCTCGGCCAAGTTGAGTTCCGGAGCC
ATTGATCTCACGAAATTCCTCCCAGAAAACCCTCCCGTTTCCACCACCAT
CAGCGCCTTCAACGCTACTTTCTCCGGCGACTTCAAAGACCCCTCCACCT
GG
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