prot_P-canaliculata_contig100390.99.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig100390.99.1
Unique Name	prot_P-canaliculata_contig100390.99.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	292

Homology

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BLAST of mRNA_P-canaliculata_contig100390.99.1 vs. uniprot
Match: A0A2E0QXA7_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E0QXA7_9BACT)

HSP 1 Score: 117 bits (294), Expect = 7.190e-26
Identity = 88/299 (29.43%), Postives = 147/299 (49.16%), Query Frame = 0

Query:    1 FVGLLSATPIFLLLLNGPIFRFAAKKGLAIYAEKNGLEHQATITGSLWSGPSITDLSLTPEIEATGPVRKLTAKEATIDYSIPALISDGP-LGMLEKLALKQVTLDLVLKEKTEEEKAAEPPKDPDKKPFDPNTLWNLLAADFEIEDVNVSITTGEKTTIIEGFTLVLPPGGTGKIALGKLTLPNGKGSDGFTAPLTSTGDSLTIGDGIQVIDPVRIRSLVLQKEITPILSGQIDL--AGGTLDLGFTRSREISAKLSSGAIDLTKFLPENPPVSTTISA----FNATFSGDFKDPSTW 292
            FVGL+    + LL LNGP FR   K      AEK G+E   TI GS+W G SI ++ L  +     P+  L  +EAT+DY    LI+     G LE + +++ T+++ L E + ++K  +  K    +P D +  WNLL A+F + ++++ I  G+K+  I+ F+L   PG  G+  +  L LP  +     +A L     S+++    Q+     ++SL + +    +  G+ D   AGG     F+ + + S K+  G   +   +P    +   +       +  F GDF++PSTW
Sbjct:   39 FVGLI----VLLLFLNGPGFRIFGKAIALNLAEKQGIEGDFTIDGSIWGGFSIGNVELEGK---ENPLVSLKLEEATVDYDTWGLITSATTFGWLELVRIQKATVEIDLPEPSGDKKKPKEQKKSQAEPKDFSPFWNLLDAEFALAEIDLVIKQGDKSYRIDNFSLQSNPGEDGRFTITGLELPGNEPVSPISAVLQKDEHSVSL-QSWQIGSTTSLQSLTVAESKPGVFDGEADFKFAGGKFSANFSSAGKASLKMHRGTTFVLSEIPAGGEIQAKLGGRVTDLDLRFDGDFENPSTW 329

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig100390.99.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig100390.99.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1

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x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A2E0QXA7_9BACT	7.190e-26	29.43	Uncharacterized protein n=1 Tax=Verrucomicrobiales...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

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x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..15
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 24..292
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..23 score: 0.525

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig100390	contig	P-canaliculata_contig100390:152..1027 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig100390.99.1	mRNA_P-canaliculata_contig100390.99.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig100390 152..1027 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig100390.99.1 ID=prot_P-canaliculata_contig100390.99.1|Name=mRNA_P-canaliculata_contig100390.99.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=292bp
FVGLLSATPIFLLLLNGPIFRFAAKKGLAIYAEKNGLEHQATITGSLWSG
PSITDLSLTPEIEATGPVRKLTAKEATIDYSIPALISDGPLGMLEKLALK
QVTLDLVLKEKTEEEKAAEPPKDPDKKPFDPNTLWNLLAADFEIEDVNVS
ITTGEKTTIIEGFTLVLPPGGTGKIALGKLTLPNGKGSDGFTAPLTSTGD
SLTIGDGIQVIDPVRIRSLVLQKEITPILSGQIDLAGGTLDLGFTRSREI
SAKLSSGAIDLTKFLPENPPVSTTISAFNATFSGDFKDPSTW