prot_P-canaliculata_contig100344.93.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig100344.93.1
Unique Nameprot_P-canaliculata_contig100344.93.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length96
Homology
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A0J7KDR3_LASNI (Retrovirus-related gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KDR3_LASNI)

HSP 1 Score: 54.7 bits (130), Expect = 1.560e-6
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 0
Query:   12 KTAAVMGIETTGQWGACETCFQVKAKRHAVPKKTDERASVKGQRFFVDVGGPMKHSSLGGSNYVVIFVDDCTRFKVVEV 90
            +T   M IE + +   CE C + K  R   PKK++ +  +  +    DV GPMK+ SLG   Y V F+DDC+R+ VV +
Sbjct:  453 RTVLGMDIEDSERDFKCEVCVRGKMTRSFFPKKSNRQTDLL-ELIHSDVCGPMKNESLGRCRYFVTFIDDCSRWCVVNM 530          
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6A2YJM7_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YJM7_HIBSY)

HSP 1 Score: 53.5 bits (127), Expect = 3.960e-6
Identity = 26/57 (45.61%), Postives = 35/57 (61.40%), Query Frame = 0
Query:   28 CETCFQVKAKRHAVPKKTDERASVKGQRFFVDVGGPMKHSSLGGSNYVVIFVDDCTR 84
            CE C   K  R + PK++D RA    +    DV GP+K SSLG SNY ++F+DD +R
Sbjct:  430 CEGCLVGKQFRKSFPKESDTRAKKPLELIHTDVFGPIKPSSLGNSNYFLLFIDDFSR 486          
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A8J6D0F7_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D0F7_9ROSI)

HSP 1 Score: 52.4 bits (124), Expect = 1.000e-5
Identity = 25/58 (43.10%), Postives = 32/58 (55.17%), Query Frame = 0
Query:   28 CETCFQVKAKRHAVPKKTDERASVKGQRFFVDVGGPMKHSSLGGSNYVVIFVDDCTRF 85
            CE C   K  +   P     RA  + Q  + D+ GPMK +SL GS Y  +F+DDCTRF
Sbjct:  454 CEVCQLDKQTKLPFPVNKAWRAQQRLQLVYTDICGPMKTTSLNGSRYFALFIDDCTRF 511          
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6A2X065_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2X065_HIBSY)

HSP 1 Score: 52.4 bits (124), Expect = 1.010e-5
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 0
Query:   28 CETCFQVKAKRHAVPKKTDERASVKGQRFFVDVGGPMKHSSLGGSNYVVIFVDDCTR 84
            CE C   K  R + PK+++ RA    +    DV GP+K SSLG SNY ++F+DD +R
Sbjct:  351 CEGCLAGKQFRKSFPKESETRAKKPLELIHTDVCGPIKPSSLGNSNYFLLFIDDFSR 407          
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464)

HSP 1 Score: 52.0 bits (123), Expect = 1.370e-5
Identity = 25/57 (43.86%), Postives = 34/57 (59.65%), Query Frame = 0
Query:   28 CETCFQVKAKRHAVPKKTDERASVKGQRFFVDVGGPMKHSSLGGSNYVVIFVDDCTR 84
            CE C   K  R + PKK+  RA    +    D+ GP+K SSLG SNY ++F+DD +R
Sbjct:  150 CEGCLLGKQFRKSFPKKSSSRAQKPLELIHTDICGPIKPSSLGKSNYFLLFIDDFSR 206          
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6J0SSI8_9SAUR (uncharacterized protein LOC110072575 n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0SSI8_9SAUR)

HSP 1 Score: 51.6 bits (122), Expect = 1.850e-5
Identity = 24/61 (39.34%), Postives = 35/61 (57.38%), Query Frame = 0
Query:   28 CETCFQVKAKRHAVPKKTDERASVKGQRFFVDVGGPMKHSSLGGSNYVVIFVDDCTRFKVV 88
            C  C +VK  R + P  T  R+S   +    DV GPM   SLG + Y++IFVDD +R++ +
Sbjct:  496 CAVCLKVKGPRPSSPPGTKRRSSEVLELIHTDVHGPMSVPSLGNNRYILIFVDDFSRYRFI 556          
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: UPI001CC6DD69 (uncharacterized protein LOC110630572 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC6DD69)

HSP 1 Score: 51.6 bits (122), Expect = 1.900e-5
Identity = 26/57 (45.61%), Postives = 32/57 (56.14%), Query Frame = 0
Query:   28 CETCFQVKAKRHAVPKKTDERASVKGQRFFVDVGGPMKHSSLGGSNYVVIFVDDCTR 84
            CE+C   K  R +  K    RAS   +    DV GPM+ SSL GS Y V+FVDD +R
Sbjct:  586 CESCVSGKHHRDSFAKGKSRRASQAAELIHADVCGPMRTSSLNGSRYFVVFVDDYSR 642          
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6A2WSJ0_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSJ0_HIBSY)

HSP 1 Score: 50.1 bits (118), Expect = 6.530e-5
Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 0
Query:   28 CETCFQVKAKRHAVPKKTDERASVKGQRFFVDVGGPMKHSSLGGSNYVVIFVDDCTR 84
            C+ C   K  R + PK+ + RA    +    DV GP+K SSLG SNY ++F+DD +R
Sbjct:  288 CKGCLAGKQFRKSFPKELETRAKKPLELIHTDVCGPIKPSSLGNSNYFLLFIDDFSR 344          
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6A3D8T4_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3D8T4_HIBSY)

HSP 1 Score: 49.7 bits (117), Expect = 8.960e-5
Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 0
Query:   28 CETCFQVKAKRHAVPKKTDERASVKGQRFFVDVGGPMKHSSLGGSNYVVIFVDDCTR 84
            CE C   K  R + PK+++ RA    +    DV G +K SSLG SNY ++F+DD +R
Sbjct:  509 CEGCLAGKQFRKSFPKESETRAKKPFELIHTDVCGSIKPSSLGNSNYFLLFIDDFSR 565          
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 49.7 bits (117), Expect = 8.960e-5
Identity = 25/61 (40.98%), Postives = 34/61 (55.74%), Query Frame = 0
Query:   28 CETCFQVKAKRHAVPKKTDERASVKGQRFFVDVGGPMKHSSLGGSNYVVIFVDDCTRFKVV 88
            C+ C   K ++   PK+   RA+ K Q    DV GPM  +SL GS Y ++F+DD TR   V
Sbjct:  430 CDVCQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWV 490          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A0J7KDR3_LASNI1.560e-637.97Retrovirus-related gag-pol polyprotein n=1 Tax=Las... [more]
A0A6A2YJM7_HIBSY3.960e-645.61Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A8J6D0F7_9ROSI1.000e-543.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A2X065_HIBSY1.010e-543.86Integrase catalytic domain-containing protein n=1 ... [more]
UPI001F0044641.370e-543.86DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A6J0SSI8_9SAUR1.850e-539.34uncharacterized protein LOC110072575 n=1 Tax=Pogon... [more]
UPI001CC6DD691.900e-545.61uncharacterized protein LOC110630572 n=1 Tax=Manih... [more]
A0A6A2WSJ0_HIBSY6.530e-542.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3D8T4_HIBSY8.960e-542.11Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A151T355_CAJCA8.960e-540.98Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100344contigP-canaliculata_contig100344:463..750 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100344.93.1mRNA_P-canaliculata_contig100344.93.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig100344 451..992 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig100344.93.1 ID=prot_P-canaliculata_contig100344.93.1|Name=mRNA_P-canaliculata_contig100344.93.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=96bp
MLAHPSEVITRKTAAVMGIETTGQWGACETCFQVKAKRHAVPKKTDERAS
VKGQRFFVDVGGPMKHSSLGGSNYVVIFVDDCTRFKVVEVREEEK*
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