mRNA_P-canaliculata_contig100344.93.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 3.430e-11 Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 2 Query: 269 RWWK--FVKKKSDTTAPLLSLVADYITPQKLSIECI-RTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
RW + F+K KSD +ADY T CI RTD GEF+G+F R I E TPP TP+YNGVAERALGL+ + A+
Sbjct: 52 RWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAAL 137
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 3.740e-11 Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 2 Query: 269 RWWK--FVKKKSDTTAPLLSLVADYITPQKLSIEC----IRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
RW + F+K KSD A +ADY + ++ C RTD GEF+G+F R I E TPP+TP+YNGVAERALGLL + A+
Sbjct: 21 RWTRVFFLKHKSDAAAAFEPYLADY---RAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSAL 106
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 3.890e-11 Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 2 Query: 269 RWWK--FVKKKSDTTAPLLSLVADYITPQKLSIEC----IRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
RW + F+K KSD A +ADY + ++ C RTD GEF+G+F R I E TPP+TP+YNGVAERALGLL + A+
Sbjct: 225 RWTRVFFLKHKSDAAAAFEQYLADY---RAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSAL 310
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 6.440e-11 Identity = 38/86 (44.19%), Postives = 49/86 (56.98%), Query Frame = 2 Query: 269 RWWK--FVKKKSDTTAPLLSLVADYITPQ-KLSIECIRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
RW + F+K KSD + DY T + + RTDD GEF+G+F R I E TPP TP+YN VAERALGL+ + A+
Sbjct: 246 RWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAERALGLITDAAL 331
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5JZ88_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ88_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 4.980e-10 Identity = 38/86 (44.19%), Postives = 48/86 (55.81%), Query Frame = 2 Query: 269 RWWK--FVKKKSDTTAPLLSLVADYITP-QKLSIECIRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
RW + F+K KSD +ADY T + RTD GEF+G+F R I E TPP T +YNGVAERALGL+ + A+
Sbjct: 225 RWTRDFFLKHKSDAAVGFEKFLADYRTKGAPCEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTQKYNGVAERALGLITDAAL 310
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 5.940e-10 Identity = 39/81 (48.15%), Postives = 46/81 (56.79%), Query Frame = 2 Query: 269 RWWK--FVKKKSDTTAPLLSLVADYITPQ-KLSIECIRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLL 502
RW + F+K KSD L +ADY T + RTD GEF+G+F R I E TPP TP+YNGVAERALG L
Sbjct: 676 RWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGAL 756
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5K2T3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T3_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 9.070e-10 Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 2 Query: 269 RWWK--FVKKKSDTTAPLLSLVADYIT---PQKLSIECIRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
RW + +K KSD +ADY T P K+ I +RTD GEF+G+F I E TPP TP+YNGVAERALGL+ + A+
Sbjct: 52 RWTRAFLLKHKSDAAVGFEKFLADYRTKGVPCKVYI--VRTDGGGEFQGQFAEVCRTHGIKQEFTPPHTPKYNGVAERALGLITDAAL 137
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 1.350e-9 Identity = 40/89 (44.94%), Postives = 49/89 (55.06%), Query Frame = 2 Query: 269 RWWK--FVKKKSDTTAPLLSLVADYITPQKLSIEC----IRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
RW + F+K KSD +ADY T I C RTD GEF+G+F R I E TPP TP+YN VAERALGL+ + A+
Sbjct: 222 RWTRGFFLKHKSDAAIGFEKFLADYRTK---GIPCEVYFARTDGGGEFQGQFAEVCRRHGIKEEFTPPHTPKYNSVAERALGLITDAAL 307
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 1.500e-9 Identity = 39/86 (45.35%), Postives = 49/86 (56.98%), Query Frame = 2 Query: 269 RWWK--FVKKKSDTTAPLLSLVADYITPQKLSIECI-RTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
RW + F+K KSD +ADY T + I R D GEF+G+F R I E TPP TP+YNGVAERALGL+ + A+
Sbjct: 731 RWTRVFFLKHKSDAAVGFEKFLADYRTNGVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAAL 816
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 2.910e-8 Identity = 40/88 (45.45%), Postives = 49/88 (55.68%), Query Frame = 2 Query: 269 RWWK--FVKKKSDTTAPLLSLVADYIT---PQKLSIECIRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
RW + F+K KSD +ADY T P K+ I RTD GEF+G+F R I E TPP TP Y VAERALGL+ + A+
Sbjct: 512 RWTRVFFLKHKSDAAVGFEKFLADYRTEGVPCKVYIA--RTDGGGEFQGQFAEVCRRHGIKQELTPPHTPIYKDVAERALGLITDAAL 597 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100344.93.1 >prot_P-canaliculata_contig100344.93.1 ID=prot_P-canaliculata_contig100344.93.1|Name=mRNA_P-canaliculata_contig100344.93.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=96bp MLAHPSEVITRKTAAVMGIETTGQWGACETCFQVKAKRHAVPKKTDERASback to top mRNA from alignment at P-canaliculata_contig100344:451..992+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100344.93.1 ID=mRNA_P-canaliculata_contig100344.93.1|Name=mRNA_P-canaliculata_contig100344.93.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=542bp|location=Sequence derived from alignment at P-canaliculata_contig100344:451..992+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100344:451..992+ >mRNA_P-canaliculata_contig100344.93.1 ID=mRNA_P-canaliculata_contig100344.93.1|Name=mRNA_P-canaliculata_contig100344.93.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at P-canaliculata_contig100344:451..992+ (Pelvetia canaliculata dioecious)back to top |