prot_P-canaliculata_contig99572.24070.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig99572.24070.1
Unique Nameprot_P-canaliculata_contig99572.24070.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length109
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig99572.24070.1 vs. uniprot
Match: A0A1E5A3U1_9GAMM (Carb-bd_dom_fam9 domain-containing protein n=1 Tax=Chromatiales bacterium (ex Bugula neritina AB1) TaxID=1868282 RepID=A0A1E5A3U1_9GAMM)

HSP 1 Score: 58.2 bits (139), Expect = 1.320e-7
Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = 0 
Query:    1 PAFLAQLRVLDVSQLSVQVLINGNEIALQPDDSDRFVGETTIPSVGDSTIVVVWTGPGG----LDLARAEK-VFNGST--VVIFDGDYDKSFDADEDGRTNIVELDAGTDPL 105
            PA L  +  LD   L++ V +N     L   + + + G   +P+   S +VV W    G    L LAR +K V  G+   VV+F+  Y+ +FD D DG +N+VEL+ G  P+
Sbjct:   45 PALLRTVAALDGDNLTLDVAVNDQVTVLTQTEPNLWTGTVNVPANRSSDVVVSWGQNYGTFGYLPLARQQKSVVVGADPGVVVFENGYNTAFDFDNDGMSNLVELEEGRSPV 156
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99572.24070.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1E5A3U1_9GAMM1.320e-733.93Carb-bd_dom_fam9 domain-containing protein n=1 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99572contigP-canaliculata_contig99572:699..1025 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99572.24070.1mRNA_P-canaliculata_contig99572.24070.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig99572 699..1025 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig99572.24070.1 ID=prot_P-canaliculata_contig99572.24070.1|Name=mRNA_P-canaliculata_contig99572.24070.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=109bp
PAFLAQLRVLDVSQLSVQVLINGNEIALQPDDSDRFVGETTIPSVGDSTI
VVVWTGPGGLDLARAEKVFNGSTVVIFDGDYDKSFDADEDGRTNIVELDA
GTDPLDPTD
back to top