mRNA_P-canaliculata_contig99572.24070.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_P-canaliculata_contig99572.24070.1 vs. uniprot
Match: A0A1E5A3U1_9GAMM (Carb-bd_dom_fam9 domain-containing protein n=1 Tax=Chromatiales bacterium (ex Bugula neritina AB1) TaxID=1868282 RepID=A0A1E5A3U1_9GAMM) HSP 1 Score: 58.2 bits (139), Expect = 1.320e-7 Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = 1 Query: 1 PAFLAQLRVLDVSQLSVQVLINGNEIALQPDDSDRFVGETTIPSVGDSTIVVVWTGPGG----LDLARAEK-VFNGST--VVIFDGDYDKSFDADEDGRTNIVELDAGTDPL 315
PA L + LD L++ V +N L + + + G +P+ S +VV W G L LAR +K V G+ VV+F+ Y+ +FD D DG +N+VEL+ G P+
Sbjct: 45 PALLRTVAALDGDNLTLDVAVNDQVTVLTQTEPNLWTGTVNVPANRSSDVVVSWGQNYGTFGYLPLARQQKSVVVGADPGVVVFENGYNTAFDFDNDGMSNLVELEEGRSPV 156 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99572.24070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99572.24070.1 >prot_P-canaliculata_contig99572.24070.1 ID=prot_P-canaliculata_contig99572.24070.1|Name=mRNA_P-canaliculata_contig99572.24070.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=109bp PAFLAQLRVLDVSQLSVQVLINGNEIALQPDDSDRFVGETTIPSVGDSTIback to top mRNA from alignment at P-canaliculata_contig99572:699..1025- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig99572.24070.1 ID=mRNA_P-canaliculata_contig99572.24070.1|Name=mRNA_P-canaliculata_contig99572.24070.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=327bp|location=Sequence derived from alignment at P-canaliculata_contig99572:699..1025- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig99572:699..1025- >mRNA_P-canaliculata_contig99572.24070.1 ID=mRNA_P-canaliculata_contig99572.24070.1|Name=mRNA_P-canaliculata_contig99572.24070.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at P-canaliculata_contig99572:699..1025- (Pelvetia canaliculata dioecious)back to top |