Homology
BLAST of mRNA_P-canaliculata_contig99203.24038.1 vs. uniprot
Match:
A0A848FSM6_9BACT (Tetratricopeptide repeat protein n=1 Tax=Pseudoflavitalea sp. G-6-1-2 TaxID=2728841 RepID=A0A848FSM6_9BACT)
HSP 1 Score: 70.5 bits (171), Expect = 6.780e-10
Identity = 64/219 (29.22%), Postives = 96/219 (43.84%), Query Frame = 0
Query: 1 RVERYLSAGNGSAALTAARELLACDPERGDFHTVALRAAVAAGEHDAAADHLIHAKRLDGENPSVHYLDAYHHLEQHRLHKAETAVLKALSLDPEDADTWTLYGWICLERGDAPAALRCGEKARALDALDIE---ADRVVIEARRRMGDGMDRLGQRTLTELRKALSLDPENALLHEDVGDVFLELEDEPLLAEASYREALRLAPTARRVQTKLLTAIR 216
R E LS G + A+ E+L DP+ + RA DA + A ++ HYL A+ H Q + A++A+ +A+ L+P A+ + L+ + LE+ AL + ALDA I A + RR D +D +R AL DPEN+ H VG LE + A +REALRL P A + L +++
Sbjct: 10 RAELLLSQGRAAEAIKQLTEVLRQDPQNTHALGLMARARFDQKNFDAGIELAHRAISIEPNESYFHYLLAFGHYLQDKNVDAQSAISRAIQLNPYQAEYFGLWSLLLLEKNQFEQALEKANEGLALDAESISCLNARATALNKLRRTDDAID--------TMRAALDQDPENSFTHTTVGWNLLE-KGRQKEATKHFREALRLNPNAEAARAGLKQSLK 219
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99203.24038.1 vs. uniprot
Analysis Date: 2022-09-16 (
Diamond blastp: OGS1.0 vs UniRef90 )
Total hits: 1
R V E R Y L S A G N G S A A L T A A R E L L A C D P E R G D F H T V A L R A A V A A G E H D A A A D H L I H A K R L D G E N P S V H Y L D A Y H H L E Q H R L H K A E T A V L K A L S L D P E D A D T W T L Y G W I C L E R G D A P A A L R C G E K A R A L D A L D I E A D R V V I E A R R R M G D G M D R L G Q R T L T E L R K A L S L D P E N A L L H E D V G D V F L E L E D E P L L A E A S Y R E A L R L A P T A R R V Q T K L L T A I R K R S R V L Y A L Y A P W R G L K K W F A E M A D P E S E S I P I L A F I S A A I G L L G W A I F V Y P I I K A Y E F F T A A E V W S E A S G L K R N S P E G R R F S F H T L P S A A R M S L F A L T I V A V W 50 100 150 200 250 300 Expect = 6.78e-10 / Id = 29.22 Sequence A0A848FSM6_9BACT
Match Name E-value Identity Description
A0A848FSM6_9BACT 6.780e-10 29.22 Tetratricopeptide repeat protein n=1 Tax=Pseudofla... [more]
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InterPro
Analysis Name:
InterProScan on OGS1.0
Date Performed: 2022-09-29
R V E R Y L S A G N G S A A L T A A R E L L A C D P E R G D F H T V A L R A A V A A G E H D A A A D H L I H A K R L D G E N P S V H Y L D A Y H H L E Q H R L H K A E T A V L K A L S L D P E D A D T W T L Y G W I C L E R G D A P A A L R C G E K A R A L D A L D I E A D R V V I E A R R R M G D G M D R L G Q R T L T E L R K A L S L D P E N A L L H E D V G D V F L E L E D E P L L A E A S Y R E A L R L A P T A R R V Q T K L L T A I R K R S R V L Y A L Y A P W R G L K K W F A E M A D P E S E S I P I L A F I S A A I G L L G W A I F V Y P I I K A Y E F F T A A E V W S E A S G L K R N S P E G R R F S F H T L P S A A R M S L F A L T I V A V W 50 100 150 200 250 300 Expect = 5.4E-4 / Score = 20.5 Score = Score = Score = Score = Score = Score = Expect = 1.0E-26 / Score = 95.7 Score = Score = 15.897 Sequence PF13432 NON_CYTOPLASMIC_DOMAIN NON_CYTOPLASMIC_DOMAIN TRANSMEMBRANE CYTOPLASMIC_DOMAIN TRANSMEMBRANE TMhelix G3DSA:1.25.40.10 SSF48452 PS50293
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available PFAM PF13432 TPR_16 coord: 70..122 None No IPR available PHOBIUS NON_CYTOPLASMIC_DOMAIN Non cytoplasmic domain coord: 320..320 None No IPR available PHOBIUS NON_CYTOPLASMIC_DOMAIN Non cytoplasmic domain coord: 1..248 None No IPR available PHOBIUS TRANSMEMBRANE Transmembrane region coord: 249..270 None No IPR available PHOBIUS CYTOPLASMIC_DOMAIN Cytoplasmic domain coord: 271..297 None No IPR available PHOBIUS TRANSMEMBRANE Transmembrane region coord: 298..319 None No IPR available TMHMM TMhelix coord: 247..269 IPR011990 Tetratricopeptide-like helical domain superfamily GENE3D 1.25.40.10 coord: 1..243 IPR011990 Tetratricopeptide-like helical domain superfamily SUPERFAMILY 48452 TPR-like coord: 5..203 IPR013026 Tetratricopeptide repeat-containing domain PROSITE PS50293 TPR_REGION coord: 1..204
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence
>prot_P-canaliculata_contig99203.24038.1 ID=prot_P-canaliculata_contig99203.24038.1|Name=mRNA_P-canaliculata_contig99203.24038.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=320bp back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
Term Definition
IPR011990 TPR-like_helical_dom_sf IPR013026 TPR-contain_dom