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Homology
BLAST of mRNA_P-canaliculata_contig99203.24038.1 vs. uniprot
Match: A0A848FSM6_9BACT (Tetratricopeptide repeat protein n=1 Tax=Pseudoflavitalea sp. G-6-1-2 TaxID=2728841 RepID=A0A848FSM6_9BACT) HSP 1 Score: 70.5 bits (171), Expect = 6.780e-10 Identity = 64/219 (29.22%), Postives = 96/219 (43.84%), Query Frame = 1 Query: 1 RVERYLSAGNGSAALTAARELLACDPERGDFHTVALRAAVAAGEHDAAADHLIHAKRLDGENPSVHYLDAYHHLEQHRLHKAETAVLKALSLDPEDADTWTLYGWICLERGDAPAALRCGEKARALDALDIE---ADRVVIEARRRMGDGMDRLGQRTLTELRKALSLDPENALLHEDVGDVFLELEDEPLLAEASYREALRLAPTARRVQTKLLTAIR 648
R E LS G + A+ E+L DP+ + RA DA + A ++ HYL A+ H Q + A++A+ +A+ L+P A+ + L+ + LE+ AL + ALDA I A + RR D +D +R AL DPEN+ H VG LE + A +REALRL P A + L +++
Sbjct: 10 RAELLLSQGRAAEAIKQLTEVLRQDPQNTHALGLMARARFDQKNFDAGIELAHRAISIEPNESYFHYLLAFGHYLQDKNVDAQSAISRAIQLNPYQAEYFGLWSLLLLEKNQFEQALEKANEGLALDAESISCLNARATALNKLRRTDDAID--------TMRAALDQDPENSFTHTTVGWNLLE-KGRQKEATKHFREALRLNPNAEAARAGLKQSLK 219
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Bacteria |
| Seed ortholog score | 78.2 |
| Seed ortholog evalue | 7.9e-12 |
| Seed eggNOG ortholog | 452637.Oter_1428 |
| EggNOG free text desc. | Tetratricopeptide repeats |
| EggNOG OGs | 46T1Z@74201,COG0457@1,COG0457@2 |
| COG Functional cat. | S |
| Best tax level | Verrucomicrobia |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 960 |
| Cds size | 960 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817353.088601-CDS-P-canaliculata_contig99203:0..960 | 1622817353.088601-CDS-P-canaliculata_contig99203:0..960 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig99203 1..960 + |
| 1693495242.0074987-CDS-P-canaliculata_contig99203:0..960 | 1693495242.0074987-CDS-P-canaliculata_contig99203:0..960 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig99203 1..960 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99203.24038.1 >prot_P-canaliculata_contig99203.24038.1 ID=prot_P-canaliculata_contig99203.24038.1|Name=mRNA_P-canaliculata_contig99203.24038.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=320bp
RVERYLSAGNGSAALTAARELLACDPERGDFHTVALRAAVAAGEHDAAAD
HLIHAKRLDGENPSVHYLDAYHHLEQHRLHKAETAVLKALSLDPEDADTW
TLYGWICLERGDAPAALRCGEKARALDALDIEADRVVIEARRRMGDGMDR
LGQRTLTELRKALSLDPENALLHEDVGDVFLELEDEPLLAEASYREALRL
APTARRVQTKLLTAIRKRSRVLYALYAPWRGLKKWFAEMADPESESIPIL
AFISAAIGLLGWAIFVYPIIKAYEFFTAAEVWSEASGLKRNSPEGRRFSF
HTLPSAARMSLFALTIVAVW back to topmRNA from alignment at P-canaliculata_contig99203:1..960+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig99203.24038.1 ID=mRNA_P-canaliculata_contig99203.24038.1|Name=mRNA_P-canaliculata_contig99203.24038.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=960bp|location=Sequence derived from alignment at P-canaliculata_contig99203:1..960+ (Pelvetia canaliculata dioecious)
CGCGTCGAGCGCTATTTGAGCGCGGGCAATGGCAGCGCTGCCCTCACCGC
CGCTCGCGAACTCCTCGCGTGCGACCCCGAGCGTGGCGACTTCCATACCG
TCGCGCTGCGCGCTGCCGTAGCCGCCGGCGAGCATGACGCCGCGGCCGAT
CACCTTATTCACGCAAAGCGCCTCGATGGAGAAAACCCTTCCGTCCACTA
CCTCGATGCCTACCACCACCTCGAGCAACACCGGCTCCACAAAGCGGAAA
CAGCCGTCCTCAAAGCGCTCTCCCTCGACCCCGAAGACGCCGATACCTGG
ACTCTCTATGGCTGGATCTGCCTCGAGCGCGGCGATGCGCCCGCCGCCCT
CCGCTGCGGTGAGAAAGCACGCGCCCTCGATGCCCTCGACATCGAAGCCG
ACCGCGTGGTCATCGAAGCCCGCCGCAGGATGGGCGACGGCATGGACCGT
CTCGGGCAGCGCACCCTCACCGAGCTACGAAAAGCCCTCTCCCTCGATCC
CGAAAACGCCCTGCTCCACGAAGACGTGGGCGACGTCTTCCTCGAGCTCG
AAGACGAGCCGCTCCTCGCCGAAGCCAGCTACCGCGAAGCCCTCCGTCTC
GCCCCCACCGCCCGCCGCGTCCAGACTAAACTCCTGACAGCCATACGAAA
ACGCTCCCGCGTCCTCTACGCCCTCTACGCACCCTGGCGCGGCCTCAAAA
AATGGTTCGCCGAAATGGCCGACCCCGAATCCGAGTCCATCCCCATCCTC
GCCTTCATCTCCGCCGCCATCGGCCTCCTCGGCTGGGCGATCTTCGTCTA
CCCTATCATCAAAGCCTACGAATTTTTCACCGCCGCCGAAGTCTGGAGCG
AAGCCTCCGGCCTCAAACGCAATTCTCCTGAAGGTCGCCGCTTCTCCTTT
CACACGCTGCCATCCGCCGCGCGCATGTCACTCTTCGCCCTGACCATTGT
CGCTGTATGG back to topCoding sequence (CDS) from alignment at P-canaliculata_contig99203:1..960+ >mRNA_P-canaliculata_contig99203.24038.1 ID=mRNA_P-canaliculata_contig99203.24038.1|Name=mRNA_P-canaliculata_contig99203.24038.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1920bp|location=Sequence derived from alignment at P-canaliculata_contig99203:1..960+ (Pelvetia canaliculata dioecious)
CGCGTCGAGCGCTATTTGAGCGCGGGCAATGGCAGCGCTGCCCTCACCGC
CGCTCGCGAACTCCTCGCGTGCGACCCCGAGCGTGGCGACTTCCATACCG
TCGCGCTGCGCGCTGCCGTAGCCGCCGGCGAGCATGACGCCGCGGCCGAT
CACCTTATTCACGCAAAGCGCCTCGATGGAGAAAACCCTTCCGTCCACTA
CCTCGATGCCTACCACCACCTCGAGCAACACCGGCTCCACAAAGCGGAAA
CAGCCGTCCTCAAAGCGCTCTCCCTCGACCCCGAAGACGCCGATACCTGG
ACTCTCTATGGCTGGATCTGCCTCGAGCGCGGCGATGCGCCCGCCGCCCT
CCGCTGCGGTGAGAAAGCACGCGCCCTCGATGCCCTCGACATCGAAGCCG
ACCGCGTGGTCATCGAAGCCCGCCGCAGGATGGGCGACGGCATGGACCGT
CTCGGGCAGCGCACCCTCACCGAGCTACGAAAAGCCCTCTCCCTCGATCC
CGAAAACGCCCTGCTCCACGAAGACGTGGGCGACGTCTTCCTCGAGCTCG
AAGACGAGCCGCTCCTCGCCGAAGCCAGCTACCGCGAAGCCCTCCGTCTC
GCCCCCACCGCCCGCCGCGTCCAGACTAAACTCCTGACAGCCATACGAAA
ACGCTCCCGCGTCCTCTACGCCCTCTACGCACCCTGGCGCGGCCTCAAAA
AATGGTTCGCCGAAATGGCCGACCCCGAATCCGAGTCCATCCCCATCCTC
GCCTTCATCTCCGCCGCCATCGGCCTCCTCGGCTGGGCGATCTTCGTCTA
CCCTATCATCAAAGCCTACGAATTTTTCACCGCCGCCGAAGTCTGGAGCG
AAGCCTCCGGCCTCAAACGCAATTCTCCTGAAGGTCGCCGCTTCTCCTTT
CACACGCTGCCATCCGCCGCGCGCATGTCACTCTTCGCCCTGACCATTGT
CGCTGTATGGCGCGTCGAGCGCTATTTGAGCGCGGGCAATGGCAGCGCTG
CCCTCACCGCCGCTCGCGAACTCCTCGCGTGCGACCCCGAGCGTGGCGAC
TTCCATACCGTCGCGCTGCGCGCTGCCGTAGCCGCCGGCGAGCATGACGC
CGCGGCCGATCACCTTATTCACGCAAAGCGCCTCGATGGAGAAAACCCTT
CCGTCCACTACCTCGATGCCTACCACCACCTCGAGCAACACCGGCTCCAC
AAAGCGGAAACAGCCGTCCTCAAAGCGCTCTCCCTCGACCCCGAAGACGC
CGATACCTGGACTCTCTATGGCTGGATCTGCCTCGAGCGCGGCGATGCGC
CCGCCGCCCTCCGCTGCGGTGAGAAAGCACGCGCCCTCGATGCCCTCGAC
ATCGAAGCCGACCGCGTGGTCATCGAAGCCCGCCGCAGGATGGGCGACGG
CATGGACCGTCTCGGGCAGCGCACCCTCACCGAGCTACGAAAAGCCCTCT
CCCTCGATCCCGAAAACGCCCTGCTCCACGAAGACGTGGGCGACGTCTTC
CTCGAGCTCGAAGACGAGCCGCTCCTCGCCGAAGCCAGCTACCGCGAAGC
CCTCCGTCTCGCCCCCACCGCCCGCCGCGTCCAGACTAAACTCCTGACAG
CCATACGAAAACGCTCCCGCGTCCTCTACGCCCTCTACGCACCCTGGCGC
GGCCTCAAAAAATGGTTCGCCGAAATGGCCGACCCCGAATCCGAGTCCAT
CCCCATCCTCGCCTTCATCTCCGCCGCCATCGGCCTCCTCGGCTGGGCGA
TCTTCGTCTACCCTATCATCAAAGCCTACGAATTTTTCACCGCCGCCGAA
GTCTGGAGCGAAGCCTCCGGCCTCAAACGCAATTCTCCTGAAGGTCGCCG
CTTCTCCTTTCACACGCTGCCATCCGCCGCGCGCATGTCACTCTTCGCCC
TGACCATTGTCGCTGTATGG back to top
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