prot_P-canaliculata_contig98818.24000.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig98818.24000.1
Unique Nameprot_P-canaliculata_contig98818.24000.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length306
Homology
BLAST of mRNA_P-canaliculata_contig98818.24000.1 vs. uniprot
Match: A0A518ESV6_9BACT (Polysaccharide biosynthesis protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518ESV6_9BACT)

HSP 1 Score: 296 bits (759), Expect = 1.210e-94
Identity = 157/296 (53.04%), Postives = 208/296 (70.27%), Query Frame = 0
Query:    1 PLFEAPRNICIAALQGERRMVALSRVELGQELARLGFVVMGALITDNALGPTLGLLAGTLCGALFAVDGYSRERRSEDSILPPLIEALRSKGVGAMSAVKEGVKIGLVRNVNSLGIETIPSLLLGVFGNFDWVAYLRNALRISGMLRVLMFGINRTALPVFSQLAHVKDVQALRRTYWKVSAFSGAVTTLGLAVALPLLPFVIRVLYPANFWDPVYTLVLILSPGIAVASFSVANDVFYLVTQQMRTAVFISLGGLVVTTAVCAICVHFMPEVGAAVGLSIACLWSLVHMAYAGRW 296
            PL + PR    +ALQ ERRM+AL+RV++GQEL RL  V+ GAL   NA+GP +G+LA +  G+  A+D + RER+   S LP +  A+R++ V A  A++EG+K+GLVRN++SLG+  +P+L+LG  G+  WV YLR A R+  M R+ M GINRTALP  SQLA VKD+  LRR YW+ S +SG   TLGL V LPLLP+VI  L+  ++ +PV+ L LIL+PG+A+ SFSVANDVFYLVT QMR A+ IS+ GL V T V  +  H  P VG A+GL+  CL+SLVH+ YA  W
Sbjct:  140 PLLDVPRIAACSALQAERRMLALARVDIGQELCRLVLVLAGALAFGNAMGPVVGMLAASAAGSAIALDTFRRERKEPSSSLPRMGTAIRARSVPARLALREGIKVGLVRNIDSLGMTILPTLILGGVGDQKWVTYLRIAQRMITMARLFMQGINRTALPALSQLAGVKDLVGLRRLYWRASFYSGGAVTLGLLVFLPLLPYVIG-LFEESYAEPVWLLSLILAPGLAIVSFSVANDVFYLVTGQMRVAIVISMVGLFVNTTVITVLAHQFPRVGVAMGLTFTCLFSLVHVGYAWLW 434          
BLAST of mRNA_P-canaliculata_contig98818.24000.1 vs. uniprot
Match: A0A800N2Y8_9BACT (Lipopolysaccharide biosynthesis protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800N2Y8_9BACT)

HSP 1 Score: 247 bits (630), Expect = 1.620e-75
Identity = 136/297 (45.79%), Postives = 193/297 (64.98%), Query Frame = 0
Query:    1 PLFEAPRNICIAALQGERRMVALSRVELGQELARLGFVVMGALITDNALGPTLGLLAGTLCGALFAVDGYSRERRSEDSILPPLIEALRSK-GVGAMSAVKEGVKIGLVRNVNSLGIETIPSLLLGVFGNFDWVAYLRNALRISGMLRVLMFGINRTALPVFSQLAHVKDVQALRRTYWKVSAFSGAVTTLGLAVALPLLPFVIRVLYPANFWDPVYTLVLILSPGIAVASFSVANDVFYLVTQQMRTAVFISLGGLVVTTAVCAICVHFMPEVGAAVGLSIACLWSLVHMAYAGRW 296
            PL E PR + +A L+G RRM+A++RVE  QE+ R+  VV+GAL+T +A+GP +G ++ +  G+L A+  + RER      LP + E LR+   V     ++ G+K+G+VRN+++L ++ +P+L+LG F +  WVA+LR A R+  + R+ M GI+RTALPV S LA+V+D  ALRR YW+ +  SG +   GL ++  +LP+ IR   P  F  PV+   LIL PG AV  FSVAND FYLVT Q+R A+ +SL GL V T+V  +     P+ GAAVGLS   LWSL H+ YA  W
Sbjct:  140 PLLELPRVVALAGLEGARRMLAVTRVENAQEVLRVVLVVIGALLTGSAVGPAIGTVSASALGSLVALRVFKRERLVHAPDLPGMGEVLRAAVRVPWTMGLRLGIKMGIVRNIDALAVQVLPALILGHFSSPQWVAFLRIAQRLVDVSRMFMKGISRTALPVLSGLANVRDRAALRRVYWRATLGSGLLIASGLGISTLVLPWAIRAFLPYAFHHPVWISFLILLPGTAVVGFSVANDTFYLVTGQLRVAILLSLVGLAVNTSVLVLACMRWPDYGAAVGLSFTFLWSLTHVGYAAFW 436          
BLAST of mRNA_P-canaliculata_contig98818.24000.1 vs. uniprot
Match: A0A2E6D5A8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E6D5A8_9BACT)

HSP 1 Score: 243 bits (621), Expect = 4.810e-74
Identity = 130/297 (43.77%), Postives = 195/297 (65.66%), Query Frame = 0
Query:    1 PLFEAPRNICIAALQGERRMVALSRVELGQELARLGFVVMGALITDNALGPTLGLLAGTLCGALFAVDGYSRERRSEDSILPPLIEAL-RSKGVGAMSAVKEGVKIGLVRNVNSLGIETIPSLLLGVFGNFDWVAYLRNALRISGMLRVLMFGINRTALPVFSQLAHVKDVQALRRTYWKVSAFSGAVTTLGLAVALPLLPFVIRVLYPANFWDPVYTLVLILSPGIAVASFSVANDVFYLVTQQMRTAVFISLGGLVVTTAVCAICVHFMPEVGAAVGLSIACLWSLVHMAYAGRW 296
            PL E PR+ C AA QG RRMVAL++VE GQE  R+  VV GA+IT +A+GP +G+L  +  G++ AVD Y RE RS ++ LP +   L R K       ++ G+++G+ +N+++LG+  +P+++LG  GN  WVAY+R A RI   +R LM GINRTALP FS+L  +KD++ LRR YW+ +  SGA+ + G+ +   L+P ++   +P+++ DPV+T+ LIL+PG+ V SFSVAND FYLVT  ++ A+        V   + A+  HF P+VG ++ L++    S++H AYA  W
Sbjct:  140 PLLELPRSACCAAFQGTRRMVALAKVENGQECVRVFLVVAGAVITRDAVGPAVGMLLASCVGSVLAVDAYVRETRSGEAPLPSVRMVLGRFKEAPLFYGLRLGLRLGVTQNMHALGVNILPTMVLGFVGNTRWVAYMRLAQRIVDAVRTLMQGINRTALPYFSELVGLKDLRGLRRAYWRATLGSGALVSTGVVLIGFLVPSLVEA-FPSDYRDPVWTVFLILAPGVMVVSFSVANDTFYLVTDNLKVAIVFGAVQFAVHLTLLALLGHFYPKVGPSIALTVFFFSSVIHPAYAYFW 435          
BLAST of mRNA_P-canaliculata_contig98818.24000.1 vs. uniprot
Match: A0A800G0X3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800G0X3_9BACT)

HSP 1 Score: 235 bits (599), Expect = 1.080e-70
Identity = 123/297 (41.41%), Postives = 190/297 (63.97%), Query Frame = 0
Query:    1 PLFEAPRNICIAALQGERRMVALSRVELGQELARLGFVVMGALITDNALGPTLGLLAGTLCGALFAVDGYSRERRSEDSILPPLIEAL-RSKGVGAMSAVKEGVKIGLVRNVNSLGIETIPSLLLGVFGNFDWVAYLRNALRISGMLRVLMFGINRTALPVFSQLAHVKDVQALRRTYWKVSAFSGAVTTLGLAVALPLLPFVIRVLYPANFWDPVYTLVLILSPGIAVASFSVANDVFYLVTQQMRTAVFISLGGLVVTTAVCAICVHFMPEVGAAVGLSIACLWSLVHMAYAGRW 296
            PL E PR+ C AA QG RRMVAL++VE G E  R+  VV GA++T +A+GP +G+L  +  G++ AVD Y RE R+ +  LP +   L R K       ++ G+++G+ +N+++LG+  +P+++LGV G+  WVAY+R A RI   +R LM GINRTALP FS+L  ++D+  LRR YW+ +  SGA+ + G+     L+P +++  +P+++ DPV+T+ LIL+PG+ V SFSVAND FYLVT  ++TA+        V   +  +  +  P VG ++ L++    S++H  YA  W
Sbjct:  148 PLIELPRSACCAAFQGTRRMVALAKVENGHECVRVFLVVAGAVVTQDAVGPAVGMLVASCVGSIIAVDAYVRETRTGEKPLPKVRTVLGRFKEAPLFFGLRLGIRLGVTQNMHALGVNILPTMVLGVVGDTRWVAYMRLAQRIVDAIRTLMQGINRTALPYFSELVGLRDLSGLRRAYWRATLGSGALVSTGVVALGFLVPSIVQA-FPSDYRDPVWTVFLILAPGVMVVSFSVANDTFYLVTDNLKTAILFGAMQFAVHLTLLMLFGYLWPTVGPSIALTVFFFSSVIHPTYAYFW 443          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98818.24000.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A518ESV6_9BACT1.210e-9453.04Polysaccharide biosynthesis protein n=1 Tax=Planct... [more]
A0A800N2Y8_9BACT1.620e-7545.79Lipopolysaccharide biosynthesis protein n=1 Tax=Pl... [more]
A0A2E6D5A8_9BACT4.810e-7443.77Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A800G0X3_9BACT1.080e-7041.41Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR30250PST FAMILY PREDICTED COLANIC ACID TRANSPORTERcoord: 7..293
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 68..179
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 271..275
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 215..241
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..67
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 204..214
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 248..270
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 242..247
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 298..305
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..47
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 276..297
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 180..203
NoneNo IPR availableTMHMMTMhelixcoord: 48..67
NoneNo IPR availableTMHMMTMhelixcoord: 182..204
NoneNo IPR availableTMHMMTMhelixcoord: 248..270
NoneNo IPR availableTMHMMTMhelixcoord: 275..297
NoneNo IPR availableTMHMMTMhelixcoord: 219..241

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98818contigP-canaliculata_contig98818:138..1055 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98818.24000.1mRNA_P-canaliculata_contig98818.24000.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig98818 138..1055 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig98818.24000.1 ID=prot_P-canaliculata_contig98818.24000.1|Name=mRNA_P-canaliculata_contig98818.24000.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=306bp
PLFEAPRNICIAALQGERRMVALSRVELGQELARLGFVVMGALITDNALG
PTLGLLAGTLCGALFAVDGYSRERRSEDSILPPLIEALRSKGVGAMSAVK
EGVKIGLVRNVNSLGIETIPSLLLGVFGNFDWVAYLRNALRISGMLRVLM
FGINRTALPVFSQLAHVKDVQALRRTYWKVSAFSGAVTTLGLAVALPLLP
FVIRVLYPANFWDPVYTLVLILSPGIAVASFSVANDVFYLVTQQMRTAVF
ISLGGLVVTTAVCAICVHFMPEVGAAVGLSIACLWSLVHMAYAGRWLSHH
GSPTR*
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