mRNA_P-canaliculata_contig98818.24000.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig98818.24000.1 vs. uniprot
Match: A0A518ESV6_9BACT (Polysaccharide biosynthesis protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518ESV6_9BACT) HSP 1 Score: 296 bits (759), Expect = 1.210e-94 Identity = 157/296 (53.04%), Postives = 208/296 (70.27%), Query Frame = 1 Query: 1 PLFEAPRNICIAALQGERRMVALSRVELGQELARLGFVVMGALITDNALGPTLGLLAGTLCGALFAVDGYSRERRSEDSILPPLIEALRSKGVGAMSAVKEGVKIGLVRNVNSLGIETIPSLLLGVFGNFDWVAYLRNALRISGMLRVLMFGINRTALPVFSQLAHVKDVQALRRTYWKVSAFSGAVTTLGLAVALPLLPFVIRVLYPANFWDPVYTLVLILSPGIAVASFSVANDVFYLVTQQMRTAVFISLGGLVVTTAVCAICVHFMPEVGAAVGLSIACLWSLVHMAYAGRW 888
PL + PR +ALQ ERRM+AL+RV++GQEL RL V+ GAL NA+GP +G+LA + G+ A+D + RER+ S LP + A+R++ V A A++EG+K+GLVRN++SLG+ +P+L+LG G+ WV YLR A R+ M R+ M GINRTALP SQLA VKD+ LRR YW+ S +SG TLGL V LPLLP+VI L+ ++ +PV+ L LIL+PG+A+ SFSVANDVFYLVT QMR A+ IS+ GL V T V + H P VG A+GL+ CL+SLVH+ YA W
Sbjct: 140 PLLDVPRIAACSALQAERRMLALARVDIGQELCRLVLVLAGALAFGNAMGPVVGMLAASAAGSAIALDTFRRERKEPSSSLPRMGTAIRARSVPARLALREGIKVGLVRNIDSLGMTILPTLILGGVGDQKWVTYLRIAQRMITMARLFMQGINRTALPALSQLAGVKDLVGLRRLYWRASFYSGGAVTLGLLVFLPLLPYVIG-LFEESYAEPVWLLSLILAPGLAIVSFSVANDVFYLVTGQMRVAIVISMVGLFVNTTVITVLAHQFPRVGVAMGLTFTCLFSLVHVGYAWLW 434
BLAST of mRNA_P-canaliculata_contig98818.24000.1 vs. uniprot
Match: A0A800N2Y8_9BACT (Lipopolysaccharide biosynthesis protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800N2Y8_9BACT) HSP 1 Score: 247 bits (630), Expect = 1.620e-75 Identity = 136/297 (45.79%), Postives = 193/297 (64.98%), Query Frame = 1 Query: 1 PLFEAPRNICIAALQGERRMVALSRVELGQELARLGFVVMGALITDNALGPTLGLLAGTLCGALFAVDGYSRERRSEDSILPPLIEALRSK-GVGAMSAVKEGVKIGLVRNVNSLGIETIPSLLLGVFGNFDWVAYLRNALRISGMLRVLMFGINRTALPVFSQLAHVKDVQALRRTYWKVSAFSGAVTTLGLAVALPLLPFVIRVLYPANFWDPVYTLVLILSPGIAVASFSVANDVFYLVTQQMRTAVFISLGGLVVTTAVCAICVHFMPEVGAAVGLSIACLWSLVHMAYAGRW 888
PL E PR + +A L+G RRM+A++RVE QE+ R+ VV+GAL+T +A+GP +G ++ + G+L A+ + RER LP + E LR+ V ++ G+K+G+VRN+++L ++ +P+L+LG F + WVA+LR A R+ + R+ M GI+RTALPV S LA+V+D ALRR YW+ + SG + GL ++ +LP+ IR P F PV+ LIL PG AV FSVAND FYLVT Q+R A+ +SL GL V T+V + P+ GAAVGLS LWSL H+ YA W
Sbjct: 140 PLLELPRVVALAGLEGARRMLAVTRVENAQEVLRVVLVVIGALLTGSAVGPAIGTVSASALGSLVALRVFKRERLVHAPDLPGMGEVLRAAVRVPWTMGLRLGIKMGIVRNIDALAVQVLPALILGHFSSPQWVAFLRIAQRLVDVSRMFMKGISRTALPVLSGLANVRDRAALRRVYWRATLGSGLLIASGLGISTLVLPWAIRAFLPYAFHHPVWISFLILLPGTAVVGFSVANDTFYLVTGQLRVAILLSLVGLAVNTSVLVLACMRWPDYGAAVGLSFTFLWSLTHVGYAAFW 436
BLAST of mRNA_P-canaliculata_contig98818.24000.1 vs. uniprot
Match: A0A2E6D5A8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E6D5A8_9BACT) HSP 1 Score: 243 bits (621), Expect = 4.810e-74 Identity = 130/297 (43.77%), Postives = 195/297 (65.66%), Query Frame = 1 Query: 1 PLFEAPRNICIAALQGERRMVALSRVELGQELARLGFVVMGALITDNALGPTLGLLAGTLCGALFAVDGYSRERRSEDSILPPLIEAL-RSKGVGAMSAVKEGVKIGLVRNVNSLGIETIPSLLLGVFGNFDWVAYLRNALRISGMLRVLMFGINRTALPVFSQLAHVKDVQALRRTYWKVSAFSGAVTTLGLAVALPLLPFVIRVLYPANFWDPVYTLVLILSPGIAVASFSVANDVFYLVTQQMRTAVFISLGGLVVTTAVCAICVHFMPEVGAAVGLSIACLWSLVHMAYAGRW 888
PL E PR+ C AA QG RRMVAL++VE GQE R+ VV GA+IT +A+GP +G+L + G++ AVD Y RE RS ++ LP + L R K ++ G+++G+ +N+++LG+ +P+++LG GN WVAY+R A RI +R LM GINRTALP FS+L +KD++ LRR YW+ + SGA+ + G+ + L+P ++ +P+++ DPV+T+ LIL+PG+ V SFSVAND FYLVT ++ A+ V + A+ HF P+VG ++ L++ S++H AYA W
Sbjct: 140 PLLELPRSACCAAFQGTRRMVALAKVENGQECVRVFLVVAGAVITRDAVGPAVGMLLASCVGSVLAVDAYVRETRSGEAPLPSVRMVLGRFKEAPLFYGLRLGLRLGVTQNMHALGVNILPTMVLGFVGNTRWVAYMRLAQRIVDAVRTLMQGINRTALPYFSELVGLKDLRGLRRAYWRATLGSGALVSTGVVLIGFLVPSLVEA-FPSDYRDPVWTVFLILAPGVMVVSFSVANDTFYLVTDNLKVAIVFGAVQFAVHLTLLALLGHFYPKVGPSIALTVFFFSSVIHPAYAYFW 435
BLAST of mRNA_P-canaliculata_contig98818.24000.1 vs. uniprot
Match: A0A800G0X3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800G0X3_9BACT) HSP 1 Score: 235 bits (599), Expect = 1.080e-70 Identity = 123/297 (41.41%), Postives = 190/297 (63.97%), Query Frame = 1 Query: 1 PLFEAPRNICIAALQGERRMVALSRVELGQELARLGFVVMGALITDNALGPTLGLLAGTLCGALFAVDGYSRERRSEDSILPPLIEAL-RSKGVGAMSAVKEGVKIGLVRNVNSLGIETIPSLLLGVFGNFDWVAYLRNALRISGMLRVLMFGINRTALPVFSQLAHVKDVQALRRTYWKVSAFSGAVTTLGLAVALPLLPFVIRVLYPANFWDPVYTLVLILSPGIAVASFSVANDVFYLVTQQMRTAVFISLGGLVVTTAVCAICVHFMPEVGAAVGLSIACLWSLVHMAYAGRW 888
PL E PR+ C AA QG RRMVAL++VE G E R+ VV GA++T +A+GP +G+L + G++ AVD Y RE R+ + LP + L R K ++ G+++G+ +N+++LG+ +P+++LGV G+ WVAY+R A RI +R LM GINRTALP FS+L ++D+ LRR YW+ + SGA+ + G+ L+P +++ +P+++ DPV+T+ LIL+PG+ V SFSVAND FYLVT ++TA+ V + + + P VG ++ L++ S++H YA W
Sbjct: 148 PLIELPRSACCAAFQGTRRMVALAKVENGHECVRVFLVVAGAVVTQDAVGPAVGMLVASCVGSIIAVDAYVRETRTGEKPLPKVRTVLGRFKEAPLFFGLRLGIRLGVTQNMHALGVNILPTMVLGVVGDTRWVAYMRLAQRIVDAIRTLMQGINRTALPYFSELVGLRDLSGLRRAYWRATLGSGALVSTGVVALGFLVPSIVQA-FPSDYRDPVWTVFLILAPGVMVVSFSVANDTFYLVTDNLKTAILFGAMQFAVHLTLLMLFGYLWPTVGPSIALTVFFFSSVIHPTYAYFW 443 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98818.24000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98818.24000.1 >prot_P-canaliculata_contig98818.24000.1 ID=prot_P-canaliculata_contig98818.24000.1|Name=mRNA_P-canaliculata_contig98818.24000.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=306bp PLFEAPRNICIAALQGERRMVALSRVELGQELARLGFVVMGALITDNALGback to top mRNA from alignment at P-canaliculata_contig98818:138..1055- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig98818.24000.1 ID=mRNA_P-canaliculata_contig98818.24000.1|Name=mRNA_P-canaliculata_contig98818.24000.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=918bp|location=Sequence derived from alignment at P-canaliculata_contig98818:138..1055- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig98818:138..1055- >mRNA_P-canaliculata_contig98818.24000.1 ID=mRNA_P-canaliculata_contig98818.24000.1|Name=mRNA_P-canaliculata_contig98818.24000.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1836bp|location=Sequence derived from alignment at P-canaliculata_contig98818:138..1055- (Pelvetia canaliculata dioecious)back to top |