prot_P-canaliculata_contig9872.23980.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9872.23980.1
Unique Nameprot_P-canaliculata_contig9872.23980.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length283
Homology
BLAST of mRNA_P-canaliculata_contig9872.23980.1 vs. uniprot
Match: A0A6H5KU38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU38_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 5.660e-35
Identity = 115/309 (37.22%), Postives = 158/309 (51.13%), Query Frame = 0
Query:    1 TRRSRKRWSKARERSQQYIRQWGKFLSQVDKHFDGEALLRKKLSKICLDHPDVSNEVTFVALALSRGRAFEASAVLHLARAKEEATLVVMMLDVTAFIALARKLAKRQHRLQLL------------------------EKQRKTTTYRQVQHSSHPRHEILPQRQHRWDIQHHCSLPRNICQSKQQRGENTPRRWQGDYFPADVNGAFVGVGDDPRGDGRKGVVNKTWCRGGKLWGNDNEYEGAYV-ADGTISSSQFNLRRSDSASAPLLLPPLTGLMYD-TPPLPNTLKVVLSTSSCLAPAAHKHFGL 283
            TR S  RW K  E+S+QY+R W  FLS+  +HFDGEA +RK++S I   HPDVSNEV FVALA SRGR+ EA+AVLHL RAK+EA LV MML+VTAFI LAR+ A+R                               + + +  ++RQ +H    R+   P+   R   +    L   +C+ +Q+R +    +  G  +   +N A  GV  D            +W        N  +Y    + A G    S+   +   S SAP LLPP+ G + + TPP P++LK VLSTS+ +A      FGL
Sbjct: 1962 TRGSGNRWHKKVEQSRQYLRMWEVFLSRAHRHFDGEADVRKRMSVIRRAHPDVSNEVAFVALAQSRGRSSEAAAVLHLPRAKDEAALVAMMLNVTAFIGLAREAAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKGEHRQPSWRQHEHQQEERY-CHPEYHRRDGTEDQQRLNNYMCEQQQRRQKQGEEQRSGHEWA--INDASTGVIGD--------AAENSW----HSQRNKQDYGAEPISAGGDAGRSRGEAQSQRSDSAPSLLPPIEGWLTEGTPPSPSSLKTVLSTSTSVAVGVPSGFGL 2255          
BLAST of mRNA_P-canaliculata_contig9872.23980.1 vs. uniprot
Match: D8LGD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD3_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 3.530e-32
Identity = 111/295 (37.63%), Postives = 148/295 (50.17%), Query Frame = 0
Query:    1 TRRSRKRWSKARERSQQYIRQWGKFLSQVDKHFDGEALLRKKLSKICLDHPDVSNEVTFVALALSRGRAFEASAVLHLARAKEEATLVVMMLDVTAFIALARKLAKRQHRLQLLEKQRKTTTYRQVQHSSHPRHEILPQRQHR---WDIQHHCSLPRNICQSKQQRGENTPRRWQGDYFPADVNGAFVGVGDDPRG-------DGRKGVVNKTWCRGGKLWGNDNEYEGAYV-ADGTISSSQFNLRRSDSASAPLLLPPLTGLMYD-TPPLPNTLKVVLSTSSCLAPAAHKHFGL 283
            TR S  RW K  E+S+QY+R+W  FLS+  +HFDGEA +RK++S I   HPDVSNEV FVALA SRGR+ EA+AVLHL RAK+EA LV MMLDVTAFI LAR+ A+R                               + +HR   W  QH           +  R ++   + + + +  +        G++ R        D   GV+            N  +Y    + A G    S+   +   S SAP LLPP+ G + + TPP PN+LK VLSTS+ +A      FGL
Sbjct: 2014 TRGSGNRWHKKVEQSRQYLRRWEVFLSRAHRHFDGEADVRKRMSVIRRAHPDVSNEVAFVALAQSRGRSSEAAAVLHLPRAKDEAALVAMMLDVTAFIGLAREAAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGEHRQPSWR-QHQRQQEEWYSHPEDHRRDSAEDKQRLNNYIWEQXXXXXKQGEERRSGHEWARDDASTGVIGDAAENNWHSQRNKQDYGAEPISAGGNAGRSRGEAQSRRSDSAPSLLPPIEGWLTEGTPPSPNSLKTVLSTSTSVAVGVPSGFGL 2307          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9872.23980.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU38_9PHAE5.660e-3537.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGD3_ECTSI3.530e-3237.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9872contigP-canaliculata_contig9872:9825..10992 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9872.23980.1mRNA_P-canaliculata_contig9872.23980.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9872 9825..10992 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9872.23980.1 ID=prot_P-canaliculata_contig9872.23980.1|Name=mRNA_P-canaliculata_contig9872.23980.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=283bp
TRRSRKRWSKARERSQQYIRQWGKFLSQVDKHFDGEALLRKKLSKICLDH
PDVSNEVTFVALALSRGRAFEASAVLHLARAKEEATLVVMMLDVTAFIAL
ARKLAKRQHRLQLLEKQRKTTTYRQVQHSSHPRHEILPQRQHRWDIQHHC
SLPRNICQSKQQRGENTPRRWQGDYFPADVNGAFVGVGDDPRGDGRKGVV
NKTWCRGGKLWGNDNEYEGAYVADGTISSSQFNLRRSDSASAPLLLPPLT
GLMYDTPPLPNTLKVVLSTSSCLAPAAHKHFGL
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