mRNA_P-canaliculata_contig9872.23980.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9872.23980.1 vs. uniprot
Match: A0A6H5KU38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU38_9PHAE) HSP 1 Score: 144 bits (362), Expect = 5.660e-35 Identity = 115/309 (37.22%), Postives = 158/309 (51.13%), Query Frame = 1 Query: 1 TRRSRKRWSKARERSQQYIRQWGKFLSQVDKHFDGEALLRKKLSKICLDHPDVSNEVTFVALALSRGRAFEASAVLHLARAKEEATLVVMMLDVTAFIALARKLAKRQHRLQLL------------------------EKQRKTTTYRQVQHSSHPRHEILPQRQHRWDIQHHCSLPRNICQSKQQRGENTPRRWQGDYFPADVNGAFVGVGDDPRGDGRKGVVNKTWCRGGKLWGNDNEYEGAYV-ADGTISSSQFNLRRSDSASAPLLLPPLTGLMYD-TPPLPNTLKVVLSTSSCLAPAAHKHFGL 849
TR S RW K E+S+QY+R W FLS+ +HFDGEA +RK++S I HPDVSNEV FVALA SRGR+ EA+AVLHL RAK+EA LV MML+VTAFI LAR+ A+R + + + ++RQ +H R+ P+ R + L +C+ +Q+R + + G + +N A GV D +W N +Y + A G S+ + S SAP LLPP+ G + + TPP P++LK VLSTS+ +A FGL
Sbjct: 1962 TRGSGNRWHKKVEQSRQYLRMWEVFLSRAHRHFDGEADVRKRMSVIRRAHPDVSNEVAFVALAQSRGRSSEAAAVLHLPRAKDEAALVAMMLNVTAFIGLAREAAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKGEHRQPSWRQHEHQQEERY-CHPEYHRRDGTEDQQRLNNYMCEQQQRRQKQGEEQRSGHEWA--INDASTGVIGD--------AAENSW----HSQRNKQDYGAEPISAGGDAGRSRGEAQSQRSDSAPSLLPPIEGWLTEGTPPSPSSLKTVLSTSTSVAVGVPSGFGL 2255
BLAST of mRNA_P-canaliculata_contig9872.23980.1 vs. uniprot
Match: D8LGD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD3_ECTSI) HSP 1 Score: 135 bits (341), Expect = 3.530e-32 Identity = 111/295 (37.63%), Postives = 148/295 (50.17%), Query Frame = 1 Query: 1 TRRSRKRWSKARERSQQYIRQWGKFLSQVDKHFDGEALLRKKLSKICLDHPDVSNEVTFVALALSRGRAFEASAVLHLARAKEEATLVVMMLDVTAFIALARKLAKRQHRLQLLEKQRKTTTYRQVQHSSHPRHEILPQRQHR---WDIQHHCSLPRNICQSKQQRGENTPRRWQGDYFPADVNGAFVGVGDDPRG-------DGRKGVVNKTWCRGGKLWGNDNEYEGAYV-ADGTISSSQFNLRRSDSASAPLLLPPLTGLMYD-TPPLPNTLKVVLSTSSCLAPAAHKHFGL 849
TR S RW K E+S+QY+R+W FLS+ +HFDGEA +RK++S I HPDVSNEV FVALA SRGR+ EA+AVLHL RAK+EA LV MMLDVTAFI LAR+ A+R + +HR W QH + R ++ + + + + + G++ R D GV+ N +Y + A G S+ + S SAP LLPP+ G + + TPP PN+LK VLSTS+ +A FGL
Sbjct: 2014 TRGSGNRWHKKVEQSRQYLRRWEVFLSRAHRHFDGEADVRKRMSVIRRAHPDVSNEVAFVALAQSRGRSSEAAAVLHLPRAKDEAALVAMMLDVTAFIGLAREAAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGEHRQPSWR-QHQRQQEEWYSHPEDHRRDSAEDKQRLNNYIWEQXXXXXKQGEERRSGHEWARDDASTGVIGDAAENNWHSQRNKQDYGAEPISAGGNAGRSRGEAQSRRSDSAPSLLPPIEGWLTEGTPPSPNSLKTVLSTSTSVAVGVPSGFGL 2307 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9872.23980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9872.23980.1 >prot_P-canaliculata_contig9872.23980.1 ID=prot_P-canaliculata_contig9872.23980.1|Name=mRNA_P-canaliculata_contig9872.23980.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=283bp TRRSRKRWSKARERSQQYIRQWGKFLSQVDKHFDGEALLRKKLSKICLDHback to top mRNA from alignment at P-canaliculata_contig9872:9825..10992+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9872.23980.1 ID=mRNA_P-canaliculata_contig9872.23980.1|Name=mRNA_P-canaliculata_contig9872.23980.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1168bp|location=Sequence derived from alignment at P-canaliculata_contig9872:9825..10992+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9872:9825..10992+ >mRNA_P-canaliculata_contig9872.23980.1 ID=mRNA_P-canaliculata_contig9872.23980.1|Name=mRNA_P-canaliculata_contig9872.23980.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1698bp|location=Sequence derived from alignment at P-canaliculata_contig9872:9825..10992+ (Pelvetia canaliculata dioecious)back to top |