prot_P-canaliculata_contig98620.23971.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig98620.23971.1
Unique Nameprot_P-canaliculata_contig98620.23971.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length240
Homology
BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: A0A848U247_9GAMM (Peptidoglycan-binding protein n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848U247_9GAMM)

HSP 1 Score: 124 bits (311), Expect = 3.540e-31
Identity = 73/182 (40.11%), Postives = 100/182 (54.95%), Query Frame = 0
Query:   65 GPNFTEPSAQFPCGSADGDDNASENFTWSDNCHISRANQFSTSLYAAGIQRVVWCAGFQGDSNATTVDAFTDGVFGANTQQAVRDFQSAR--GLVSDGVVGDQTWQVMQDELVLL---DTPVGTDVYGVEGTRCGTTSLFLNSTSF--DNNQVVFGGWQLTEGA-NDDSPVPFTIDTPSGRI 238
            G  F + S    CGS DG DN+SEN  W+DNC + R  QF+ SL+A GIQRV++C G+    + T   AF DG  G  ++ A++ FQSA+   LV DG+VG  TW  +Q  +V L      V  D +G +   C    +F   TS   DN+ V+ GGW L +   N D   PF+ + P GR+
Sbjct:   66 GTQFVDVSPDNVCGSEDGLDNSSENDPWNDNCVVKRFGQFADSLFAVGIQRVLFCDGY---GSGTDYTAFADGEIGPGSEAAIKAFQSAQVPPLVDDGIVGPATWGALQGRIVQLAFGQVGVTPDTWGFDTGVCADIPMFYQETSASPDNSGVILGGWTLAKDQPNTDQETPFSYEEPFGRL 244          
BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: A0A2T3W9X5_9DEIO (Peptidoglycan-binding protein n=4 Tax=Deinococcus TaxID=1298 RepID=A0A2T3W9X5_9DEIO)

HSP 1 Score: 58.2 bits (139), Expect = 2.500e-6
Identity = 42/103 (40.78%), Postives = 50/103 (48.54%), Query Frame = 0
Query:  136 DGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQVMQDELVLLDTPVGTDVYGVEGTRCGTTSLFLNSTSFDNNQVVFGGWQLTEGANDDSPVPFTIDTPSGRI 238
            DGVFGA T  AVRDFQS RGL +DGVVG  TW      LV   +  GT      GT     S  LN     N+++  G    T   N   P    +DT +GR+
Sbjct:  132 DGVFGAGTNTAVRDFQSKRGLSADGVVGLNTWHA----LVTGSSTGGT------GTTASLASQILN-----NSRITLGTSSSTVNGN---PRQNIVDTAAGRL 216          
BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: F2R9Q2_STRVP (PG_binding_1 domain-containing protein n=4 Tax=Streptomyces TaxID=1883 RepID=F2R9Q2_STRVP)

HSP 1 Score: 53.5 bits (127), Expect = 1.350e-5
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 0
Query:  102 NQFSTSLYAAGIQRVVWCAGFQGDSNATTVDAFTDGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQ 168
            +Q  + +  AG+Q +V  A F   S   +   FTDGVFGA T  AVR FQS  GL  DG+VG +TW+
Sbjct:   61 SQGDSDICVAGLQELV--ARFGLTSWEQSGGNFTDGVFGARTDSAVRRFQSNHGLAPDGIVGPRTWE 125          
BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: UPI0009DCDB68 (peptidoglycan-binding protein n=1 Tax=Leptolyngbya sp. KIOST-1 TaxID=1229172 RepID=UPI0009DCDB68)

HSP 1 Score: 53.9 bits (128), Expect = 2.710e-5
Identity = 21/37 (56.76%), Postives = 31/37 (83.78%), Query Frame = 0
Query:  136 DGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQVMQD 172
            DG+FGA+T  AVR  Q  +GL++DG+VG+QTWQ+++D
Sbjct:   73 DGIFGADTAAAVRSLQQQQGLLADGIVGEQTWQILED 109          
BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: A0A1S8MDX2_9CLOT (Zinc D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium roseum TaxID=84029 RepID=A0A1S8MDX2_9CLOT)

HSP 1 Score: 52.8 bits (125), Expect = 3.050e-5
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 0
Query:  113 IQRVVWCAGFQGDSNATTVDAFTDGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQVMQD 172
            +++V WC   Q       +    DG+FG  T  AVR+FQS  GL SDGVVG  TW+V+++
Sbjct:   81 VEQVQWC--LQRAGYLANIYTSADGIFGNETDTAVRNFQSNHGLSSDGVVGPNTWRVLKN 138          
BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: UPI00035C347E (TIGR02594 family protein n=5 Tax=Teredinibacter turnerae TaxID=2426 RepID=UPI00035C347E)

HSP 1 Score: 53.9 bits (128), Expect = 4.750e-5
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 0
Query:  130 TVDAFTDGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQVMQDELV 175
            T+    DG FG NT+ AV+ FQ A+GLVSDGVVG +TWQ +  ++V
Sbjct:   27 TIKLKNDGFFGRNTEDAVKAFQRAKGLVSDGVVGAKTWQSLTKKIV 72          
BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: A0A8J4SXF2_9STRA (PG_binding_1 domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A8J4SXF2_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 4.850e-5
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 0
Query:  105 STSLYAAGIQRVVWCAGFQGDSNATTVDAFTDGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQVMQDELV 175
            S+  + + +Q  +W +G+Q  +   TVD    G FG+ T  AV+ FQ+A GL SDGVVG+ TW  + + +V
Sbjct:   30 SSGGFVSALQADLWSSGYQ--NTVGTVD----GSFGSGTTSAVKSFQTAEGLTSDGVVGNGTWSKLDNYMV 94          
BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: A0A231PII1_9ACTN (Uncharacterized protein n=2 Tax=Streptomyces sp. XY006 TaxID=2021410 RepID=A0A231PII1_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 5.140e-5
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0
Query:  136 DGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQVMQ 171
            DGVFG  T QAVRD+QS RGLV+DGVVG  TW  +Q
Sbjct:  564 DGVFGPGTTQAVRDYQSTRGLVNDGVVGSATWGALQ 599          
BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: A0A8J7J9J4_9CYAN (Lysozyme (Fragment) n=2 Tax=Nodosilinea sp. LEGE 07088 TaxID=2777968 RepID=A0A8J7J9J4_9CYAN)

HSP 1 Score: 54.3 bits (129), Expect = 6.040e-5
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 0
Query:  135 TDGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQVMQD 172
            TDGVFG  + +AVR FQ++RGLV+DGVVG QTW ++Q+
Sbjct:  372 TDGVFGPASDRAVRQFQASRGLVADGVVGPQTWALLQN 409          
BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: A0A3N6DHP1_9ACTN (N-acetylmuramoyl-L-alanine amidase A n=7 Tax=Streptomyces TaxID=1883 RepID=A0A3N6DHP1_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 6.540e-5
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 0
Query:  136 DGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQVMQ 171
            DG FGANT +AVRD+QSARGL +DG VG  TW+ +Q
Sbjct:  477 DGAFGANTDKAVRDYQSARGLSADGSVGPDTWKALQ 512          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A848U247_9GAMM3.540e-3140.11Peptidoglycan-binding protein n=1 Tax=Granulosicoc... [more]
A0A2T3W9X5_9DEIO2.500e-640.78Peptidoglycan-binding protein n=4 Tax=Deinococcus ... [more]
F2R9Q2_STRVP1.350e-546.27PG_binding_1 domain-containing protein n=4 Tax=Str... [more]
UPI0009DCDB682.710e-556.76peptidoglycan-binding protein n=1 Tax=Leptolyngbya... [more]
A0A1S8MDX2_9CLOT3.050e-543.33Zinc D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostrid... [more]
UPI00035C347E4.750e-554.35TIGR02594 family protein n=5 Tax=Teredinibacter tu... [more]
A0A8J4SXF2_9STRA4.850e-539.44PG_binding_1 domain-containing protein n=2 Tax=cel... [more]
A0A231PII1_9ACTN5.140e-569.44Uncharacterized protein n=2 Tax=Streptomyces sp. X... [more]
A0A8J7J9J4_9CYAN6.040e-563.16Lysozyme (Fragment) n=2 Tax=Nodosilinea sp. LEGE 0... [more]
A0A3N6DHP1_9ACTN6.540e-566.67N-acetylmuramoyl-L-alanine amidase A n=7 Tax=Strep... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036366PGBD superfamilyGENE3D1.10.101.10coord: 111..176
e-value: 8.4E-14
score: 52.9
IPR002477Peptidoglycan binding-likePFAMPF01471PG_binding_1coord: 135..170
e-value: 8.1E-11
score: 42.0
IPR036365PGBD-like superfamilySUPERFAMILY47090PGBD-likecoord: 113..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98620contigP-canaliculata_contig98620:106..825 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98620.23971.1mRNA_P-canaliculata_contig98620.23971.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig98620 106..825 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig98620.23971.1 ID=prot_P-canaliculata_contig98620.23971.1|Name=mRNA_P-canaliculata_contig98620.23971.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=240bp
DGDGFVDTQLDFGAYDANGDGLEDFDVNGDGLVDFSVADGNGNLAGFDST
GDGNADLNGDGGGVGPNFTEPSAQFPCGSADGDDNASENFTWSDNCHISR
ANQFSTSLYAAGIQRVVWCAGFQGDSNATTVDAFTDGVFGANTQQAVRDF
QSARGLVSDGVVGDQTWQVMQDELVLLDTPVGTDVYGVEGTRCGTTSLFL
NSTSFDNNQVVFGGWQLTEGANDDSPVPFTIDTPSGRID*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036366PGBDSf
IPR002477Peptidoglycan-bd-like
IPR036365PGBD-like_sf