mRNA_P-canaliculata_contig98620.23971.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98620.23971.1
Unique NamemRNA_P-canaliculata_contig98620.23971.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: A0A848U247_9GAMM (Peptidoglycan-binding protein n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848U247_9GAMM)

HSP 1 Score: 124 bits (311), Expect = 3.540e-31
Identity = 73/182 (40.11%), Postives = 100/182 (54.95%), Query Frame = 1 
Query:  193 GPNFTEPSAQFPCGSADGDDNASENFTWSDNCHISRANQFSTSLYAAGIQRVVWCAGFQGDSNATTVDAFTDGVFGANTQQAVRDFQSAR--GLVSDGVVGDQTWQVMQDELVLL---DTPVGTDVYGVEGTRCGTTSLFLNSTSF--DNNQVVFGGWQLTEGA-NDDSPVPFTIDTPSGRI 714
            G  F + S    CGS DG DN+SEN  W+DNC + R  QF+ SL+A GIQRV++C G+    + T   AF DG  G  ++ A++ FQSA+   LV DG+VG  TW  +Q  +V L      V  D +G +   C    +F   TS   DN+ V+ GGW L +   N D   PF+ + P GR+
Sbjct:   66 GTQFVDVSPDNVCGSEDGLDNSSENDPWNDNCVVKRFGQFADSLFAVGIQRVLFCDGY---GSGTDYTAFADGEIGPGSEAAIKAFQSAQVPPLVDDGIVGPATWGALQGRIVQLAFGQVGVTPDTWGFDTGVCADIPMFYQETSASPDNSGVILGGWTLAKDQPNTDQETPFSYEEPFGRL 244
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BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: A0A2T3W9X5_9DEIO (Peptidoglycan-binding protein n=4 Tax=Deinococcus TaxID=1298 RepID=A0A2T3W9X5_9DEIO)

HSP 1 Score: 58.2 bits (139), Expect = 2.500e-6
Identity = 42/103 (40.78%), Postives = 50/103 (48.54%), Query Frame = 1 
Query:  406 DGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQVMQDELVLLDTPVGTDVYGVEGTRCGTTSLFLNSTSFDNNQVVFGGWQLTEGANDDSPVPFTIDTPSGRI 714
            DGVFGA T  AVRDFQS RGL +DGVVG  TW      LV   +  GT      GT     S  LN     N+++  G    T   N   P    +DT +GR+
Sbjct:  132 DGVFGAGTNTAVRDFQSKRGLSADGVVGLNTWHA----LVTGSSTGGT------GTTASLASQILN-----NSRITLGTSSSTVNGN---PRQNIVDTAAGRL 216
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BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: F2R9Q2_STRVP (PG_binding_1 domain-containing protein n=4 Tax=Streptomyces TaxID=1883 RepID=F2R9Q2_STRVP)

HSP 1 Score: 53.5 bits (127), Expect = 1.350e-5
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:  304 NQFSTSLYAAGIQRVVWCAGFQGDSNATTVDAFTDGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQ 504
            +Q  + +  AG+Q +V  A F   S   +   FTDGVFGA T  AVR FQS  GL  DG+VG +TW+
Sbjct:   61 SQGDSDICVAGLQELV--ARFGLTSWEQSGGNFTDGVFGARTDSAVRRFQSNHGLAPDGIVGPRTWE 125
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BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: UPI0009DCDB68 (peptidoglycan-binding protein n=1 Tax=Leptolyngbya sp. KIOST-1 TaxID=1229172 RepID=UPI0009DCDB68)

HSP 1 Score: 53.9 bits (128), Expect = 2.710e-5
Identity = 21/37 (56.76%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:  406 DGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQVMQD 516
            DG+FGA+T  AVR  Q  +GL++DG+VG+QTWQ+++D
Sbjct:   73 DGIFGADTAAAVRSLQQQQGLLADGIVGEQTWQILED 109
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BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: A0A1S8MDX2_9CLOT (Zinc D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium roseum TaxID=84029 RepID=A0A1S8MDX2_9CLOT)

HSP 1 Score: 52.8 bits (125), Expect = 3.050e-5
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:  337 IQRVVWCAGFQGDSNATTVDAFTDGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQVMQD 516
            +++V WC   Q       +    DG+FG  T  AVR+FQS  GL SDGVVG  TW+V+++
Sbjct:   81 VEQVQWC--LQRAGYLANIYTSADGIFGNETDTAVRNFQSNHGLSSDGVVGPNTWRVLKN 138
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BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: UPI00035C347E (TIGR02594 family protein n=5 Tax=Teredinibacter turnerae TaxID=2426 RepID=UPI00035C347E)

HSP 1 Score: 53.9 bits (128), Expect = 4.750e-5
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:  388 TVDAFTDGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQVMQDELV 525
            T+    DG FG NT+ AV+ FQ A+GLVSDGVVG +TWQ +  ++V
Sbjct:   27 TIKLKNDGFFGRNTEDAVKAFQRAKGLVSDGVVGAKTWQSLTKKIV 72
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BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: A0A8J4SXF2_9STRA (PG_binding_1 domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A8J4SXF2_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 4.850e-5
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:  313 STSLYAAGIQRVVWCAGFQGDSNATTVDAFTDGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQVMQDELV 525
            S+  + + +Q  +W +G+Q  +   TVD    G FG+ T  AV+ FQ+A GL SDGVVG+ TW  + + +V
Sbjct:   30 SSGGFVSALQADLWSSGYQ--NTVGTVD----GSFGSGTTSAVKSFQTAEGLTSDGVVGNGTWSKLDNYMV 94
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BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: A0A231PII1_9ACTN (Uncharacterized protein n=2 Tax=Streptomyces sp. XY006 TaxID=2021410 RepID=A0A231PII1_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 5.140e-5
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:  406 DGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQVMQ 513
            DGVFG  T QAVRD+QS RGLV+DGVVG  TW  +Q
Sbjct:  564 DGVFGPGTTQAVRDYQSTRGLVNDGVVGSATWGALQ 599
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BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: A0A8J7J9J4_9CYAN (Lysozyme (Fragment) n=2 Tax=Nodosilinea sp. LEGE 07088 TaxID=2777968 RepID=A0A8J7J9J4_9CYAN)

HSP 1 Score: 54.3 bits (129), Expect = 6.040e-5
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:  403 TDGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQVMQD 516
            TDGVFG  + +AVR FQ++RGLV+DGVVG QTW ++Q+
Sbjct:  372 TDGVFGPASDRAVRQFQASRGLVADGVVGPQTWALLQN 409
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BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Match: A0A3N6DHP1_9ACTN (N-acetylmuramoyl-L-alanine amidase A n=7 Tax=Streptomyces TaxID=1883 RepID=A0A3N6DHP1_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 6.540e-5
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:  406 DGVFGANTQQAVRDFQSARGLVSDGVVGDQTWQVMQ 513
            DG FGANT +AVRD+QSARGL +DG VG  TW+ +Q
Sbjct:  477 DGAFGANTDKAVRDYQSARGLSADGSVGPDTWKALQ 512
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98620.23971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A848U247_9GAMM3.540e-3140.11Peptidoglycan-binding protein n=1 Tax=Granulosicoc... [more]
A0A2T3W9X5_9DEIO2.500e-640.78Peptidoglycan-binding protein n=4 Tax=Deinococcus ... [more]
F2R9Q2_STRVP1.350e-546.27PG_binding_1 domain-containing protein n=4 Tax=Str... [more]
UPI0009DCDB682.710e-556.76peptidoglycan-binding protein n=1 Tax=Leptolyngbya... [more]
A0A1S8MDX2_9CLOT3.050e-543.33Zinc D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostrid... [more]
UPI00035C347E4.750e-554.35TIGR02594 family protein n=5 Tax=Teredinibacter tu... [more]
A0A8J4SXF2_9STRA4.850e-539.44PG_binding_1 domain-containing protein n=2 Tax=cel... [more]
A0A231PII1_9ACTN5.140e-569.44Uncharacterized protein n=2 Tax=Streptomyces sp. X... [more]
A0A8J7J9J4_9CYAN6.040e-563.16Lysozyme (Fragment) n=2 Tax=Nodosilinea sp. LEGE 0... [more]
A0A3N6DHP1_9ACTN6.540e-566.67N-acetylmuramoyl-L-alanine amidase A n=7 Tax=Strep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98620contigP-canaliculata_contig98620:106..825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size720
Cds size720
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817347.7523587-CDS-P-canaliculata_contig98620:105..8251622817347.7523587-CDS-P-canaliculata_contig98620:105..825Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98620 106..825 +
1693495238.4217448-CDS-P-canaliculata_contig98620:105..8251693495238.4217448-CDS-P-canaliculata_contig98620:105..825Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98620 106..825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98620.23971.1prot_P-canaliculata_contig98620.23971.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98620 106..825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98620.23971.1

>prot_P-canaliculata_contig98620.23971.1 ID=prot_P-canaliculata_contig98620.23971.1|Name=mRNA_P-canaliculata_contig98620.23971.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=240bp
DGDGFVDTQLDFGAYDANGDGLEDFDVNGDGLVDFSVADGNGNLAGFDST
GDGNADLNGDGGGVGPNFTEPSAQFPCGSADGDDNASENFTWSDNCHISR
ANQFSTSLYAAGIQRVVWCAGFQGDSNATTVDAFTDGVFGANTQQAVRDF
QSARGLVSDGVVGDQTWQVMQDELVLLDTPVGTDVYGVEGTRCGTTSLFL
NSTSFDNNQVVFGGWQLTEGANDDSPVPFTIDTPSGRID*
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mRNA from alignment at P-canaliculata_contig98620:106..825+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98620.23971.1 ID=mRNA_P-canaliculata_contig98620.23971.1|Name=mRNA_P-canaliculata_contig98620.23971.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=720bp|location=Sequence derived from alignment at P-canaliculata_contig98620:106..825+ (Pelvetia canaliculata dioecious)
GATGGTGATGGTTTCGTCGACACCCAGCTGGACTTCGGTGCCTACGACGC
CAACGGCGATGGTCTCGAAGACTTCGACGTGAACGGCGATGGCCTGGTCG
ACTTTTCGGTCGCCGATGGCAACGGCAACCTGGCAGGCTTCGACAGCACC
GGCGATGGCAACGCGGATCTGAACGGTGATGGCGGCGGTGTCGGGCCGAA
CTTCACCGAGCCGAGTGCGCAGTTCCCGTGTGGCTCTGCCGACGGAGACG
ACAACGCTTCCGAGAACTTCACCTGGTCAGACAACTGTCATATCTCCCGG
GCCAACCAGTTCAGCACCAGTCTGTATGCCGCTGGTATCCAGCGGGTCGT
ATGGTGCGCAGGCTTCCAGGGGGACTCCAATGCAACCACGGTCGATGCCT
TCACCGATGGCGTCTTCGGCGCCAACACACAGCAGGCCGTGCGGGACTTC
CAGAGCGCTCGCGGGCTGGTATCCGATGGTGTTGTAGGCGACCAGACCTG
GCAGGTCATGCAGGATGAGCTGGTGCTGCTGGATACGCCGGTAGGTACGG
ACGTCTATGGGGTGGAAGGTACCCGGTGTGGCACCACCAGTCTGTTCCTG
AATTCGACCAGTTTTGATAACAATCAGGTCGTGTTCGGTGGCTGGCAGCT
GACAGAAGGCGCCAACGACGACTCGCCGGTACCGTTCACCATCGATACCC
CGTCGGGTCGGATCGACTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig98620:106..825+

>mRNA_P-canaliculata_contig98620.23971.1 ID=mRNA_P-canaliculata_contig98620.23971.1|Name=mRNA_P-canaliculata_contig98620.23971.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1440bp|location=Sequence derived from alignment at P-canaliculata_contig98620:106..825+ (Pelvetia canaliculata dioecious)
GATGGTGATGGTTTCGTCGACACCCAGCTGGACTTCGGTGCCTACGACGC
CAACGGCGATGGTCTCGAAGACTTCGACGTGAACGGCGATGGCCTGGTCG
ACTTTTCGGTCGCCGATGGCAACGGCAACCTGGCAGGCTTCGACAGCACC
GGCGATGGCAACGCGGATCTGAACGGTGATGGCGGCGGTGTCGGGCCGAA
CTTCACCGAGCCGAGTGCGCAGTTCCCGTGTGGCTCTGCCGACGGAGACG
ACAACGCTTCCGAGAACTTCACCTGGTCAGACAACTGTCATATCTCCCGG
GCCAACCAGTTCAGCACCAGTCTGTATGCCGCTGGTATCCAGCGGGTCGT
ATGGTGCGCAGGCTTCCAGGGGGACTCCAATGCAACCACGGTCGATGCCT
TCACCGATGGCGTCTTCGGCGCCAACACACAGCAGGCCGTGCGGGACTTC
CAGAGCGCTCGCGGGCTGGTATCCGATGGTGTTGTAGGCGACCAGACCTG
GCAGGTCATGCAGGATGAGCTGGTGCTGCTGGATACGCCGGTAGGTACGG
ACGTCTATGGGGTGGAAGGTACCCGGTGTGGCACCACCAGTCTGTTCCTG
AATTCGACCAGTTTTGATAACAATCAGGTCGTGTTCGGTGGCTGGCAGCT
GACAGAAGGCGCCAACGACGACTCGCCGGTACCGTTCACCATCGATACCC
CGTCGGGTCGGATCGACTGAGATGGTGATGGTTTCGTCGACACCCAGCTG
GACTTCGGTGCCTACGACGCCAACGGCGATGGTCTCGAAGACTTCGACGT
GAACGGCGATGGCCTGGTCGACTTTTCGGTCGCCGATGGCAACGGCAACC
TGGCAGGCTTCGACAGCACCGGCGATGGCAACGCGGATCTGAACGGTGAT
GGCGGCGGTGTCGGGCCGAACTTCACCGAGCCGAGTGCGCAGTTCCCGTG
TGGCTCTGCCGACGGAGACGACAACGCTTCCGAGAACTTCACCTGGTCAG
ACAACTGTCATATCTCCCGGGCCAACCAGTTCAGCACCAGTCTGTATGCC
GCTGGTATCCAGCGGGTCGTATGGTGCGCAGGCTTCCAGGGGGACTCCAA
TGCAACCACGGTCGATGCCTTCACCGATGGCGTCTTCGGCGCCAACACAC
AGCAGGCCGTGCGGGACTTCCAGAGCGCTCGCGGGCTGGTATCCGATGGT
GTTGTAGGCGACCAGACCTGGCAGGTCATGCAGGATGAGCTGGTGCTGCT
GGATACGCCGGTAGGTACGGACGTCTATGGGGTGGAAGGTACCCGGTGTG
GCACCACCAGTCTGTTCCTGAATTCGACCAGTTTTGATAACAATCAGGTC
GTGTTCGGTGGCTGGCAGCTGACAGAAGGCGCCAACGACGACTCGCCGGT
ACCGTTCACCATCGATACCCCGTCGGGTCGGATCGACTGA
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