prot_P-canaliculata_contig98423.23944.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig98423.23944.1
Unique Nameprot_P-canaliculata_contig98423.23944.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length173
Homology
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BLAST of mRNA_P-canaliculata_contig98423.23944.1 vs. uniprot
Match: UPI0019A03241 (Uncharacterized protein n=2 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI0019A03241)

HSP 1 Score: 64.7 bits (156), Expect = 2.860e-9
Identity = 65/87 (74.71%), Postives = 68/87 (78.16%), Query Frame = 0 
Query:    2 LLALPAYAATLPAHAQIRVDARIQMSSGSCSGCDLSNKAMNGVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMYRVTGDG 88
            L  LPA A    A AQIRVDARIQM++GSCSGCDLS KAMNGVRL   XXXXXXXXXXXXXXXXXXXXXXXX      LMYRV G+G
Sbjct:   11 LTLLPAVAIAGHASAQIRVDARIQMNAGSCSGCDLSEKAMNGVRLNNAXXXXXXXXXXXXXXXXXXXXXXXXAHFRSALMYRVEGNG 97
[Close]
BLAST of mRNA_P-canaliculata_contig98423.23944.1 vs. uniprot
Match: UPI00041208AD (pentapeptide repeat-containing protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00041208AD)

HSP 1 Score: 58.9 bits (141), Expect = 3.610e-7
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0 
Query:   11 TLPAHAQIRVDARIQMSSGSCSGCDLSNKAMNGVRL 46
            TLPA AQIRVDARI  S+GSCS CDLSNK MNGV+L
Sbjct:   20 TLPASAQIRVDARIHSSAGSCSQCDLSNKRMNGVKL 55
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98423.23944.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0019A032412.860e-974.71Uncharacterized protein n=2 Tax=Litorimonas cladop... [more]
UPI00041208AD3.610e-780.56pentapeptide repeat-containing protein n=1 Tax=Hel... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.160.20.80coord: 9..173
e-value: 1.5E-34
score: 120.5
NoneNo IPR availablePANTHERPTHR14136:SF17BTB/POZ DOMAIN-CONTAINING PROTEINcoord: 24..133
NoneNo IPR availablePANTHERPTHR14136UNCHARACTERIZEDcoord: 93..172
NoneNo IPR availablePANTHERPTHR14136:SF17BTB/POZ DOMAIN-CONTAINING PROTEINcoord: 93..172
NoneNo IPR availablePANTHERPTHR14136UNCHARACTERIZEDcoord: 24..133
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..173
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availableSUPERFAMILY141571Pentapeptide repeat-likecoord: 27..173
IPR001646Pentapeptide repeatPFAMPF00805Pentapeptidecoord: 41..78
e-value: 1.1E-7
score: 31.3
IPR001646Pentapeptide repeatPFAMPF13599Pentapeptide_4coord: 96..171
e-value: 4.2E-11
score: 42.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98423contigP-canaliculata_contig98423:20..538 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98423.23944.1mRNA_P-canaliculata_contig98423.23944.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig98423 20..538 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig98423.23944.1 ID=prot_P-canaliculata_contig98423.23944.1|Name=mRNA_P-canaliculata_contig98423.23944.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=173bp
FLLALPAYAATLPAHAQIRVDARIQMSSGSCSGCDLSNKAMNGVRLNNAN
LSNSLFNNSNLSGGSLDGSDLSGANFRGALMYRVTGDGVTMPGAILEDAT
LTEANLSNAKFAEANLSRANLSRGIFSGTDFTGAKFDNANLTEAQFQSGQ
FKNAEFGSAILIDSQLDNADFSG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat