mRNA_P-canaliculata_contig98423.23944.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98423.23944.1
Unique NamemRNA_P-canaliculata_contig98423.23944.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig98423.23944.1 vs. uniprot
Match: UPI0019A03241 (Uncharacterized protein n=2 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI0019A03241)

HSP 1 Score: 64.7 bits (156), Expect = 2.860e-9
Identity = 65/87 (74.71%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    4 LLALPAYAATLPAHAQIRVDARIQMSSGSCSGCDLSNKAMNGVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMYRVTGDG 264
            L  LPA A    A AQIRVDARIQM++GSCSGCDLS KAMNGVRL   XXXXXXXXXXXXXXXXXXXXXXXX      LMYRV G+G
Sbjct:   11 LTLLPAVAIAGHASAQIRVDARIQMNAGSCSGCDLSEKAMNGVRLNNAXXXXXXXXXXXXXXXXXXXXXXXXAHFRSALMYRVEGNG 97
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BLAST of mRNA_P-canaliculata_contig98423.23944.1 vs. uniprot
Match: UPI00041208AD (pentapeptide repeat-containing protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00041208AD)

HSP 1 Score: 58.9 bits (141), Expect = 3.610e-7
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   31 TLPAHAQIRVDARIQMSSGSCSGCDLSNKAMNGVRL 138
            TLPA AQIRVDARI  S+GSCS CDLSNK MNGV+L
Sbjct:   20 TLPASAQIRVDARIHSSAGSCSQCDLSNKRMNGVKL 55
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98423.23944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0019A032412.860e-974.71Uncharacterized protein n=2 Tax=Litorimonas cladop... [more]
UPI00041208AD3.610e-780.56pentapeptide repeat-containing protein n=1 Tax=Hel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98423contigP-canaliculata_contig98423:20..538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size519
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.460955-CDS-P-canaliculata_contig98423:19..5381622817345.460955-CDS-P-canaliculata_contig98423:19..538Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98423 20..538 -
1693495236.8820257-CDS-P-canaliculata_contig98423:19..5381693495236.8820257-CDS-P-canaliculata_contig98423:19..538Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98423 20..538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98423.23944.1prot_P-canaliculata_contig98423.23944.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98423 20..538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98423.23944.1

>prot_P-canaliculata_contig98423.23944.1 ID=prot_P-canaliculata_contig98423.23944.1|Name=mRNA_P-canaliculata_contig98423.23944.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=173bp
FLLALPAYAATLPAHAQIRVDARIQMSSGSCSGCDLSNKAMNGVRLNNAN
LSNSLFNNSNLSGGSLDGSDLSGANFRGALMYRVTGDGVTMPGAILEDAT
LTEANLSNAKFAEANLSRANLSRGIFSGTDFTGAKFDNANLTEAQFQSGQ
FKNAEFGSAILIDSQLDNADFSG
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mRNA from alignment at P-canaliculata_contig98423:20..538-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98423.23944.1 ID=mRNA_P-canaliculata_contig98423.23944.1|Name=mRNA_P-canaliculata_contig98423.23944.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=519bp|location=Sequence derived from alignment at P-canaliculata_contig98423:20..538- (Pelvetia canaliculata dioecious)
TTTTTATTGGCTCTGCCGGCTTACGCGGCAACCTTGCCTGCGCATGCTCA
AATTCGCGTGGATGCGCGGATACAAATGAGCAGCGGGTCCTGCTCAGGCT
GTGATCTGTCGAACAAGGCCATGAATGGTGTACGTCTGAACAACGCAAAT
TTGTCAAACAGCCTGTTCAATAATTCAAATTTGTCCGGCGGATCACTGGA
CGGGTCAGACCTGTCCGGCGCAAATTTTCGCGGCGCGCTGATGTACCGCG
TCACGGGCGACGGCGTGACTATGCCCGGCGCAATTTTGGAAGACGCTACA
TTGACCGAGGCCAACCTTTCAAATGCCAAATTTGCTGAAGCTAATCTGTC
GCGCGCCAACCTGTCCCGCGGTATCTTTTCAGGCACGGACTTCACGGGTG
CAAAGTTTGACAATGCCAACTTGACCGAAGCGCAATTCCAAAGCGGGCAG
TTTAAAAATGCGGAATTCGGAAGCGCGATCCTCATAGATTCTCAGCTTGA
TAATGCTGATTTTTCAGGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig98423:20..538-

>mRNA_P-canaliculata_contig98423.23944.1 ID=mRNA_P-canaliculata_contig98423.23944.1|Name=mRNA_P-canaliculata_contig98423.23944.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at P-canaliculata_contig98423:20..538- (Pelvetia canaliculata dioecious)
TTTTTATTGGCTCTGCCGGCTTACGCGGCAACCTTGCCTGCGCATGCTCA
AATTCGCGTGGATGCGCGGATACAAATGAGCAGCGGGTCCTGCTCAGGCT
GTGATCTGTCGAACAAGGCCATGAATGGTGTACGTCTGAACAACGCAAAT
TTGTCAAACAGCCTGTTCAATAATTCAAATTTGTCCGGCGGATCACTGGA
CGGGTCAGACCTGTCCGGCGCAAATTTTCGCGGCGCGCTGATGTACCGCG
TCACGGGCGACGGCGTGACTATGCCCGGCGCAATTTTGGAAGACGCTACA
TTGACCGAGGCCAACCTTTCAAATGCCAAATTTGCTGAAGCTAATCTGTC
GCGCGCCAACCTGTCCCGCGGTATCTTTTCAGGCACGGACTTCACGGGTG
CAAAGTTTGACAATGCCAACTTGACCGAAGCGCAATTCCAAAGCGGGCAG
TTTAAAAATGCGGAATTCGGAAGCGCGATCCTCATAGATTCTCAGCTTGA
TAATGCTGATTTTTCAGGCTTTTTATTGGCTCTGCCGGCTTACGCGGCAA
CCTTGCCTGCGCATGCTCAAATTCGCGTGGATGCGCGGATACAAATGAGC
AGCGGGTCCTGCTCAGGCTGTGATCTGTCGAACAAGGCCATGAATGGTGT
ACGTCTGAACAACGCAAATTTGTCAAACAGCCTGTTCAATAATTCAAATT
TGTCCGGCGGATCACTGGACGGGTCAGACCTGTCCGGCGCAAATTTTCGC
GGCGCGCTGATGTACCGCGTCACGGGCGACGGCGTGACTATGCCCGGCGC
AATTTTGGAAGACGCTACATTGACCGAGGCCAACCTTTCAAATGCCAAAT
TTGCTGAAGCTAATCTGTCGCGCGCCAACCTGTCCCGCGGTATCTTTTCA
GGCACGGACTTCACGGGTGCAAAGTTTGACAATGCCAACTTGACCGAAGC
GCAATTCCAAAGCGGGCAGTTTAAAAATGCGGAATTCGGAAGCGCGATCC
TCATAGATTCTCAGCTTGATAATGCTGATTTTTCAGGC
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