prot_P-canaliculata_contig98239.23922.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig98239.23922.1
Unique Name	prot_P-canaliculata_contig98239.23922.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	261

Homology

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BLAST of mRNA_P-canaliculata_contig98239.23922.1 vs. uniprot
Match: A0A518EWQ2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EWQ2_9BACT)

HSP 1 Score: 117 bits (292), Expect = 1.920e-27
Identity = 86/268 (32.09%), Postives = 127/268 (47.39%), Query Frame = 0

Query:    2 VGTPILWRIAVDHPAHSGASLQAPKDLGLSWSLMEELRNGPGD--DVLGGEGAPVDLVFEALLMPLEGGELSVPEVTVKFTSGFELPIATESIQVLDALAEGEDAPRPAPGFRDVEARAVGSPATVLAAVLALLLLPLGWVMFRRIRRRSAGPIPDDSVRTPGQ-AVAALDPSADPRGV-MAALTPHLRRSIE----SLHGESAAALTDTEWAAWIRKAEGQAAPNIRGIYRDSADLVDELVEVRFGGGDPTVFAAKEAHMKALLLVQ 261
            VG  ++WR+ +D P   G +L  P  LG  W++++    GP D  D    +    DL     +MPL GG L+ P +T  F  G    +   S++V+ +L E ED PRP  GFR+   R VG P   L  +  +L+  +G +++R   +R A   P           +A L+ S  P    MAAL P  RR+ +        +  AALTD  WA  +              + D+A L+ EL   R+GGG+PT FA K+A  +A  L +
Sbjct:   53 VGGHLVWRVTIDDPERDGVALTEPA-LGPEWAVID----GPTDLLDPSQPKEERPDLDRTWTIMPLAGGVLATPALTATFADGAVAQVPAASVEVVPSLGETEDVPRPLLGFREAPDRRVGDPRAALLVLGGVLIALVGLLVWRSAAKRRASARPASPAEPSAMDQIAGLEKSELPASARMAALAPLFRRAFDVALAPAERQRRAALTDEAWAREVENG-----------HPDAASLLVELSAYRYGGGEPTSFAVKDAIERATRLAK 304

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig98239.23922.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig98239.23922.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A518EWQ2_9BACT	1.920e-27	32.09	Uncharacterized protein n=1 Tax=Planctomycetes bac...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 143..261
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..122
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 123..142
None	No IPR available	TMHMM	TMhelix		coord: 118..140

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig98239	contig	P-canaliculata_contig98239:165..947 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig98239.23922.1	mRNA_P-canaliculata_contig98239.23922.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig98239 165..947 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig98239.23922.1 ID=prot_P-canaliculata_contig98239.23922.1|Name=mRNA_P-canaliculata_contig98239.23922.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=261bp
QVGTPILWRIAVDHPAHSGASLQAPKDLGLSWSLMEELRNGPGDDVLGGE
GAPVDLVFEALLMPLEGGELSVPEVTVKFTSGFELPIATESIQVLDALAE
GEDAPRPAPGFRDVEARAVGSPATVLAAVLALLLLPLGWVMFRRIRRRSA
GPIPDDSVRTPGQAVAALDPSADPRGVMAALTPHLRRSIESLHGESAAAL
TDTEWAAWIRKAEGQAAPNIRGIYRDSADLVDELVEVRFGGGDPTVFAAK
EAHMKALLLVQ