mRNA_P-canaliculata_contig98239.23922.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98239.23922.1
Unique NamemRNA_P-canaliculata_contig98239.23922.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig98239.23922.1 vs. uniprot
Match: A0A518EWQ2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EWQ2_9BACT)

HSP 1 Score: 117 bits (292), Expect = 1.920e-27
Identity = 86/268 (32.09%), Postives = 127/268 (47.39%), Query Frame = 1 
Query:    4 VGTPILWRIAVDHPAHSGASLQAPKDLGLSWSLMEELRNGPGD--DVLGGEGAPVDLVFEALLMPLEGGELSVPEVTVKFTSGFELPIATESIQVLDALAEGEDAPRPAPGFRDVEARAVGSPATVLAAVLALLLLPLGWVMFRRIRRRSAGPIPDDSVRTPGQ-AVAALDPSADPRGV-MAALTPHLRRSIE----SLHGESAAALTDTEWAAWIRKAEGQAAPNIRGIYRDSADLVDELVEVRFGGGDPTVFAAKEAHMKALLLVQ 783
            VG  ++WR+ +D P   G +L  P  LG  W++++    GP D  D    +    DL     +MPL GG L+ P +T  F  G    +   S++V+ +L E ED PRP  GFR+   R VG P   L  +  +L+  +G +++R   +R A   P           +A L+ S  P    MAAL P  RR+ +        +  AALTD  WA  +              + D+A L+ EL   R+GGG+PT FA K+A  +A  L +
Sbjct:   53 VGGHLVWRVTIDDPERDGVALTEPA-LGPEWAVID----GPTDLLDPSQPKEERPDLDRTWTIMPLAGGVLATPALTATFADGAVAQVPAASVEVVPSLGETEDVPRPLLGFREAPDRRVGDPRAALLVLGGVLIALVGLLVWRSAAKRRASARPASPAEPSAMDQIAGLEKSELPASARMAALAPLFRRAFDVALAPAERQRRAALTDEAWAREVENG-----------HPDAASLLVELSAYRYGGGEPTSFAVKDAIERATRLAK 304
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98239.23922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A518EWQ2_9BACT1.920e-2732.09Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98239contigP-canaliculata_contig98239:165..947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size783
Cds size783
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817343.9689379-CDS-P-canaliculata_contig98239:164..9471622817343.9689379-CDS-P-canaliculata_contig98239:164..947Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98239 165..947 -
1693495236.069433-CDS-P-canaliculata_contig98239:164..9471693495236.069433-CDS-P-canaliculata_contig98239:164..947Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98239 165..947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98239.23922.1prot_P-canaliculata_contig98239.23922.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98239 165..947 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98239.23922.1

>prot_P-canaliculata_contig98239.23922.1 ID=prot_P-canaliculata_contig98239.23922.1|Name=mRNA_P-canaliculata_contig98239.23922.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=261bp
QVGTPILWRIAVDHPAHSGASLQAPKDLGLSWSLMEELRNGPGDDVLGGE
GAPVDLVFEALLMPLEGGELSVPEVTVKFTSGFELPIATESIQVLDALAE
GEDAPRPAPGFRDVEARAVGSPATVLAAVLALLLLPLGWVMFRRIRRRSA
GPIPDDSVRTPGQAVAALDPSADPRGVMAALTPHLRRSIESLHGESAAAL
TDTEWAAWIRKAEGQAAPNIRGIYRDSADLVDELVEVRFGGGDPTVFAAK
EAHMKALLLVQ
back to top

mRNA from alignment at P-canaliculata_contig98239:165..947-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98239.23922.1 ID=mRNA_P-canaliculata_contig98239.23922.1|Name=mRNA_P-canaliculata_contig98239.23922.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=783bp|location=Sequence derived from alignment at P-canaliculata_contig98239:165..947- (Pelvetia canaliculata dioecious)
CAGGTGGGCACCCCGATCCTGTGGCGCATCGCCGTAGACCACCCCGCGCA
TAGCGGAGCTAGCCTTCAGGCGCCCAAGGATCTCGGCCTCAGCTGGAGCC
TCATGGAAGAGCTTCGAAACGGCCCCGGGGATGACGTTCTTGGCGGCGAA
GGAGCGCCGGTGGACCTTGTGTTCGAGGCGCTCCTCATGCCCTTGGAGGG
TGGAGAGCTGAGCGTGCCCGAGGTGACCGTGAAGTTCACGAGCGGCTTCG
AGCTACCGATCGCTACTGAGTCCATTCAGGTTCTGGATGCGCTCGCGGAA
GGGGAGGACGCGCCGCGCCCGGCGCCCGGGTTCCGCGATGTGGAGGCCCG
GGCCGTAGGCAGCCCCGCGACGGTGCTCGCGGCGGTCCTGGCGCTCCTCC
TCCTGCCCCTCGGCTGGGTGATGTTCCGAAGGATCCGGCGCCGGAGCGCC
GGTCCCATCCCGGACGACTCCGTGCGAACGCCAGGCCAGGCAGTGGCGGC
CCTCGACCCATCCGCGGATCCCCGCGGAGTCATGGCGGCGCTCACGCCCC
ATCTAAGGCGATCCATCGAGTCCCTTCACGGTGAATCTGCGGCGGCCCTG
ACGGACACGGAATGGGCCGCTTGGATCCGCAAGGCCGAGGGCCAGGCTGC
GCCTAATATCAGAGGGATCTACAGGGATTCCGCGGACCTCGTGGACGAGC
TTGTGGAAGTCCGGTTCGGCGGCGGCGACCCAACGGTCTTCGCGGCCAAG
GAAGCGCACATGAAGGCGCTGTTGCTCGTGCAG
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig98239:165..947-

>mRNA_P-canaliculata_contig98239.23922.1 ID=mRNA_P-canaliculata_contig98239.23922.1|Name=mRNA_P-canaliculata_contig98239.23922.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at P-canaliculata_contig98239:165..947- (Pelvetia canaliculata dioecious)
CAGGTGGGCACCCCGATCCTGTGGCGCATCGCCGTAGACCACCCCGCGCA
TAGCGGAGCTAGCCTTCAGGCGCCCAAGGATCTCGGCCTCAGCTGGAGCC
TCATGGAAGAGCTTCGAAACGGCCCCGGGGATGACGTTCTTGGCGGCGAA
GGAGCGCCGGTGGACCTTGTGTTCGAGGCGCTCCTCATGCCCTTGGAGGG
TGGAGAGCTGAGCGTGCCCGAGGTGACCGTGAAGTTCACGAGCGGCTTCG
AGCTACCGATCGCTACTGAGTCCATTCAGGTTCTGGATGCGCTCGCGGAA
GGGGAGGACGCGCCGCGCCCGGCGCCCGGGTTCCGCGATGTGGAGGCCCG
GGCCGTAGGCAGCCCCGCGACGGTGCTCGCGGCGGTCCTGGCGCTCCTCC
TCCTGCCCCTCGGCTGGGTGATGTTCCGAAGGATCCGGCGCCGGAGCGCC
GGTCCCATCCCGGACGACTCCGTGCGAACGCCAGGCCAGGCAGTGGCGGC
CCTCGACCCATCCGCGGATCCCCGCGGAGTCATGGCGGCGCTCACGCCCC
ATCTAAGGCGATCCATCGAGTCCCTTCACGGTGAATCTGCGGCGGCCCTG
ACGGACACGGAATGGGCCGCTTGGATCCGCAAGGCCGAGGGCCAGGCTGC
GCCTAATATCAGAGGGATCTACAGGGATTCCGCGGACCTCGTGGACGAGC
TTGTGGAAGTCCGGTTCGGCGGCGGCGACCCAACGGTCTTCGCGGCCAAG
GAAGCGCACATGAAGGCGCTGTTGCTCGTGCAGCAGGTGGGCACCCCGAT
CCTGTGGCGCATCGCCGTAGACCACCCCGCGCATAGCGGAGCTAGCCTTC
AGGCGCCCAAGGATCTCGGCCTCAGCTGGAGCCTCATGGAAGAGCTTCGA
AACGGCCCCGGGGATGACGTTCTTGGCGGCGAAGGAGCGCCGGTGGACCT
TGTGTTCGAGGCGCTCCTCATGCCCTTGGAGGGTGGAGAGCTGAGCGTGC
CCGAGGTGACCGTGAAGTTCACGAGCGGCTTCGAGCTACCGATCGCTACT
GAGTCCATTCAGGTTCTGGATGCGCTCGCGGAAGGGGAGGACGCGCCGCG
CCCGGCGCCCGGGTTCCGCGATGTGGAGGCCCGGGCCGTAGGCAGCCCCG
CGACGGTGCTCGCGGCGGTCCTGGCGCTCCTCCTCCTGCCCCTCGGCTGG
GTGATGTTCCGAAGGATCCGGCGCCGGAGCGCCGGTCCCATCCCGGACGA
CTCCGTGCGAACGCCAGGCCAGGCAGTGGCGGCCCTCGACCCATCCGCGG
ATCCCCGCGGAGTCATGGCGGCGCTCACGCCCCATCTAAGGCGATCCATC
GAGTCCCTTCACGGTGAATCTGCGGCGGCCCTGACGGACACGGAATGGGC
CGCTTGGATCCGCAAGGCCGAGGGCCAGGCTGCGCCTAATATCAGAGGGA
TCTACAGGGATTCCGCGGACCTCGTGGACGAGCTTGTGGAAGTCCGGTTC
GGCGGCGGCGACCCAACGGTCTTCGCGGCCAAGGAAGCGCACATGAAGGC
GCTGTTGCTCGTGCAG
back to top