prot_P-canaliculata_contig974.23824.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig974.23824.1
Unique Nameprot_P-canaliculata_contig974.23824.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length293
Homology
BLAST of mRNA_P-canaliculata_contig974.23824.1 vs. uniprot
Match: A0A6H5JV51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV51_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.500e-41
Identity = 116/328 (35.37%), Postives = 164/328 (50.00%), Query Frame = 0
Query:    1 MVAMVQLLSSGGCASCKTVNPFAKSLLHKEAEMKNVSKPESEQVSGGELAEQAPAHWLLAWYVCGGHAKPPSL-LREAAEGMQQAVTCLMGSG-----------------SSLELVL---------------EVEEALESAGQSGQGMVGDIFEPCLGVAWLLTSRAALGECERVLARSILRQEDLEGVFGPRR------SSDAPLRSR----MEAVLQGLAALEDMVWLAGLQPPLLHVHDGRDLRDLLERVRVWLEGVDGRWRRTKNEMEALTYRSDSVGGDADADIDAGTGTDAAVTVVAGCKVLLEDFGDRRDGICRGLASLVA 285
            MVAMV + S+  C+SC   N         +A++K  ++             QA A WLLAWY CGG+ KPP     E  E ++Q  TCL                     SSL   L               +V  AL++AG++GQG++G IF P L VAWLLTSR A+  CE VL+ S+LR+EDL+G F          S++  + +R    +E++LQGLAALED+VWL  ++PP+ HVH G+ LRDLL+R + W+ G+ G+  R + E                   D  + T  A   + G + L+ DF  R+D I + L  L+A
Sbjct:  837 MVAMVYIFSTDSCSSCVPSNA--------DADIKERNQ------------RQASAVWLLAWYACGGYTKPPHANFSEMEEAVRQMTTCLTECSERDKVNISAKLPTEEEKSSLAEALKTGNATFASPVSAGVQVAMALKAAGEAGQGLMGAIFSPYLAVAWLLTSRLAVCNCEIVLSCSVLREEDLDGAFRAATVTSSVISAEESMHTRRSCCLESILQGLAALEDLVWLCSVRPPMSHVHQGQHLRDLLKRTKAWVSGLPGKTTRLQGE-------------------DGVSKTPLAADHLCGDQSLV-DFRYRKDAISQRLGQLLA 1124          
BLAST of mRNA_P-canaliculata_contig974.23824.1 vs. uniprot
Match: D7FWC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC0_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 5.030e-39
Identity = 100/278 (35.97%), Postives = 140/278 (50.36%), Query Frame = 0
Query:   52 QAPAHWLLAWYVCGGHAKPPSL-LREAAEGMQQAVTCLMG------------------------------SGSSLELVLEVEEALESAGQSGQGMVGDIFEPCLGVAWLLTSRAALGECERVLARSILRQEDLEGVFGPRR------SSDAPLRSR----MEAVLQGLAALEDMVWLAGLQPPLLHVHDGRDLRDLLERVRVWLEGVDGRW-RRTKNEMEALTYRSDSVGGDADADIDAGTGTDAAVTVVAGCKVLLEDFGDRRDGICRGLASLVAAV 287
            Q+ A WLLAWY CGG+ KPP     E  E ++Q  TCL                                S S +   ++V  AL++AG++GQG++G+IF PCL VAWLLTSR A+  CE VL  S+LRQEDL+G F          S++     R    +E++LQGLAALED+VWL  ++PP+ HVH G+ LR LL+R + W+ G+ G    + +  +      +D + GD                      V L DF  R+D I + L  L+A +
Sbjct:  824 QSSAVWLLAWYACGGYTKPPHANFSEMEEAVRQMTTCLTECSERVNISAKPPTEDENSSSAEAFKTGDATSASPVSAGVQVAMALKAAGEAGQGLMGEIFSPCLAVAWLLTSRLAVCNCEIVLGSSVLRQEDLDGAFRTATVTSTWTSAEESTHKRRSCCLESILQGLAALEDLVWLCTMRPPMSHVHQGQHLRALLKRTKAWVSGLLGNTCLQGEGGVSKTPVAADHLCGDQSL-------------------VDLVDFRSRKDAISQRLGQLLAGL 1082          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig974.23824.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JV51_9PHAE1.500e-4135.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWC0_ECTSI5.030e-3935.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig974contigP-canaliculata_contig974:17869..20682 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig974.23824.1mRNA_P-canaliculata_contig974.23824.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig974 16987..20785 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig974.23824.1 ID=prot_P-canaliculata_contig974.23824.1|Name=mRNA_P-canaliculata_contig974.23824.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=293bp
MVAMVQLLSSGGCASCKTVNPFAKSLLHKEAEMKNVSKPESEQVSGGELA
EQAPAHWLLAWYVCGGHAKPPSLLREAAEGMQQAVTCLMGSGSSLELVLE
VEEALESAGQSGQGMVGDIFEPCLGVAWLLTSRAALGECERVLARSILRQ
EDLEGVFGPRRSSDAPLRSRMEAVLQGLAALEDMVWLAGLQPPLLHVHDG
RDLRDLLERVRVWLEGVDGRWRRTKNEMEALTYRSDSVGGDADADIDAGT
GTDAAVTVVAGCKVLLEDFGDRRDGICRGLASLVAAVKPLAR*
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