Homology
BLAST of mRNA_P-canaliculata_contig974.23824.1 vs. uniprot
Match:
A0A6H5JV51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV51_9PHAE)
HSP 1 Score: 202 bits (515), Expect = 1.130e-51
Identity = 132/352 (37.50%), Postives = 185/352 (52.56%), Query Frame = 2
Query: 32 TITPIRRPFEEELWLLLVGYRHWVMVAMVQLLSSGGCASCKTVNPFAKSLLHKEAEMKNVSKPESEQVSGGELAEQAPAHWLLAWYVCGGHAKPPSL-LREAAEGMQQAVTCLMGSG-----------------SSLELVL---------------EVEEALESAGQSGQGMVGDIFEPCLGVAWLLTSRAALGECERVLARSILRQEDLEGVFGPRR------SSDAPLRSR----MEAVLQGLAALEDMVWLAGLQPPLLHVHDGRDLRDLLERVRVWLEGVDGRWRRTKNEMEALTYRSDSVGGDADADIDAGTGTDAAVTVVAGCKVLLEDFGDRRDGICRGLASLVA 958
++ +RRPFE ELWLL++GYRHWVMVAMV + S+ C+SC N +A++K ++ QA A WLLAWY CGG+ KPP E E ++Q TCL SSL L +V AL++AG++GQG++G IF P L VAWLLTSR A+ CE VL+ S+LR+EDL+G F S++ + +R +E++LQGLAALED+VWL ++PP+ HVH G+ LRDLL+R + W+ G+ G+ R + E D + T A + G + L+ DF R+D I + L L+A
Sbjct: 813 SLPTLRRPFESELWLLVLGYRHWVMVAMVYIFSTDSCSSCVPSNA--------DADIKERNQ------------RQASAVWLLAWYACGGYTKPPHANFSEMEEAVRQMTTCLTECSERDKVNISAKLPTEEEKSSLAEALKTGNATFASPVSAGVQVAMALKAAGEAGQGLMGAIFSPYLAVAWLLTSRLAVCNCEIVLSCSVLREEDLDGAFRAATVTSSVISAEESMHTRRSCCLESILQGLAALEDLVWLCSVRPPMSHVHQGQHLRDLLKRTKAWVSGLPGKTTRLQGE-------------------DGVSKTPLAADHLCGDQSLV-DFRYRKDAISQRLGQLLA 1124
BLAST of mRNA_P-canaliculata_contig974.23824.1 vs. uniprot
Match:
D7FWC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC0_ECTSI)
HSP 1 Score: 191 bits (486), Expect = 6.130e-48
Identity = 126/353 (35.69%), Postives = 174/353 (49.29%), Query Frame = 2
Query: 32 TITPIRRPFEEELWLLLVGYRHWVMVAMVQLLSSGGCASCKTVNPFAKSLLHKEAEMKNVSKPESEQVSGGELAEQAPAHWLLAWYVCGGHAKPPSL-LREAAEGMQQAVTCLMG------------------------------SGSSLELVLEVEEALESAGQSGQGMVGDIFEPCLGVAWLLTSRAALGECERVLARSILRQEDLEGVFGPRR------SSDAPLRSR----MEAVLQGLAALEDMVWLAGLQPPLLHVHDGRDLRDLLERVRVWLEGVDGRW-RRTKNEMEALTYRSDSVGGDADADIDAGTGTDAAVTVVAGCKVLLEDFGDRRDGICRGLASLVAAV 964
++ RRPFE ELWLL++GYRHWVMVAMV + S+ + C + A E Q Q+ A WLLAWY CGG+ KPP E E ++Q TCL S S + ++V AL++AG++GQG++G+IF PCL VAWLLTSR A+ CE VL S+LRQEDL+G F S++ R +E++LQGLAALED+VWL ++PP+ HVH G+ LR LL+R + W+ G+ G + + + +D + GD V L DF R+D I + L L+A +
Sbjct: 769 SLPTFRRPFESELWLLVLGYRHWVMVAMVHIFSTDSSSPCVAGDTDA-------------GIKERRQ-------RQSSAVWLLAWYACGGYTKPPHANFSEMEEAVRQMTTCLTECSERVNISAKPPTEDENSSSAEAFKTGDATSASPVSAGVQVAMALKAAGEAGQGLMGEIFSPCLAVAWLLTSRLAVCNCEIVLGSSVLRQEDLDGAFRTATVTSTWTSAEESTHKRRSCCLESILQGLAALEDLVWLCTMRPPMSHVHQGQHLRALLKRTKAWVSGLLGNTCLQGEGGVSKTPVAADHLCGDQSL-------------------VDLVDFRSRKDAISQRLGQLLAGL 1082
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig974.23824.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.13e-51 / Id = 37.50 Expect = 6.13e-48 / Id = 35.69 Sequence A0A6H5JV51_9PHAE D7FWC0_ECTSI
Match Name E-value Identity Description
A0A6H5JV51_9PHAE 1.130e-51 37.50 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D7FWC0_ECTSI 6.130e-48 35.69 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-25_003810.1 Exons 4 Model size 1864 Cds size 879 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817337.419894-UTR-P-canaliculata_contig974:16986..17868 1622817337.419894-UTR-P-canaliculata_contig974:16986..17868 Pelvetia canaliculata dioecious UTR P-canaliculata_contig974 16987..17868 - 1693495231.9016218-UTR-P-canaliculata_contig974:16986..17868 1693495231.9016218-UTR-P-canaliculata_contig974:16986..17868 Pelvetia canaliculata dioecious UTR P-canaliculata_contig974 16987..17868 - 1622817337.4853182-UTR-P-canaliculata_contig974:20682..20785 1622817337.4853182-UTR-P-canaliculata_contig974:20682..20785 Pelvetia canaliculata dioecious UTR P-canaliculata_contig974 20683..20785 - 1693495231.9632208-UTR-P-canaliculata_contig974:20682..20785 1693495231.9632208-UTR-P-canaliculata_contig974:20682..20785 Pelvetia canaliculata dioecious UTR P-canaliculata_contig974 20683..20785 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817337.4342084-CDS-P-canaliculata_contig974:17868..18201 1622817337.4342084-CDS-P-canaliculata_contig974:17868..18201 Pelvetia canaliculata dioecious CDS P-canaliculata_contig974 17869..18201 - 1693495231.9174485-CDS-P-canaliculata_contig974:17868..18201 1693495231.9174485-CDS-P-canaliculata_contig974:17868..18201 Pelvetia canaliculata dioecious CDS P-canaliculata_contig974 17869..18201 - 1622817337.4480631-CDS-P-canaliculata_contig974:18965..19172 1622817337.4480631-CDS-P-canaliculata_contig974:18965..19172 Pelvetia canaliculata dioecious CDS P-canaliculata_contig974 18966..19172 - 1693495231.9296196-CDS-P-canaliculata_contig974:18965..19172 1693495231.9296196-CDS-P-canaliculata_contig974:18965..19172 Pelvetia canaliculata dioecious CDS P-canaliculata_contig974 18966..19172 - 1622817337.4621463-CDS-P-canaliculata_contig974:19564..19857 1622817337.4621463-CDS-P-canaliculata_contig974:19564..19857 Pelvetia canaliculata dioecious CDS P-canaliculata_contig974 19565..19857 - 1693495231.9400792-CDS-P-canaliculata_contig974:19564..19857 1693495231.9400792-CDS-P-canaliculata_contig974:19564..19857 Pelvetia canaliculata dioecious CDS P-canaliculata_contig974 19565..19857 - 1622817337.4744728-CDS-P-canaliculata_contig974:20636..20682 1622817337.4744728-CDS-P-canaliculata_contig974:20636..20682 Pelvetia canaliculata dioecious CDS P-canaliculata_contig974 20637..20682 - 1693495231.9525917-CDS-P-canaliculata_contig974:20636..20682 1693495231.9525917-CDS-P-canaliculata_contig974:20636..20682 Pelvetia canaliculata dioecious CDS P-canaliculata_contig974 20637..20682 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig974.23824.1
>prot_P-canaliculata_contig974.23824.1 ID=prot_P-canaliculata_contig974.23824.1|Name=mRNA_P-canaliculata_contig974.23824.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=293bp
MVAMVQLLSSGGCASCKTVNPFAKSLLHKEAEMKNVSKPESEQVSGGELA back to top mRNA from alignment at P-canaliculata_contig974:16987..20785-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig974.23824.1 ID=mRNA_P-canaliculata_contig974.23824.1|Name=mRNA_P-canaliculata_contig974.23824.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3799bp|location=Sequence derived from alignment at P-canaliculata_contig974:16987..20785- (Pelvetia canaliculata dioecious)GCAGCAGGGGTTAGGCCCCCCTCGTGGCGCCACGATTACCCCAATCCGGC
GACCCTTCGAGGAGGAATTGTGGCTGCTACTCGTGGGCTACCGGCACTGG
GTG ATGGTGGCTATGGTGCAGCTCTTGTCGTCGGGGGGATGCGCTTCCT G
TGAGCCTTCGACAAACCTGAAGTTGAAGTTGAAGTTGAACCTCTCTCGAA
GAGGCACGGCTCGCGCAGCCATTTGGTGTGTAACTTAATGCGCTGGGATT
GCATTGTCCATGGTCATGCCATGTCGTGTCCCCTTCTGCGTCGCCAGTTG
TTAGTATTAATAGTGGTTAATAGTAGTGTGATCGGTTGCCACGGCCGGGT
GACACTGGTACCTTGAAAGATATTGATGTACAGATACTCATCGTTCAGCC
ACATCTTGGACTAGGAACATAAAAGTCTTCTATCCCTTCAAAGGGTCTAT
TTATGACGAATCGAAACGATTGCTCACCCACCTTCCCCTGCGAAATCCAT
AGCTAGCAAGCTCCAATGAACGCGTAGTTATCACGCCTTGAAGCGAGGCG
TTCGCCGATCTTCCCAACCAGCCGTGATTGTCAATACCTGTTCCGCCGAT
TTGTCGCTTCATAACTTCAACCGCTCACCTTCTAGACCAACTCTCTAACA
CTCTTATGATTACCCCACTCCAAATTAAAGCATGTGGAGCCATTGTGATT
CTCTTCAATACAATGATAGTTAGATCGCTCTTGGCCGTGCGATGGGCGGC
CGTACTAGGTACCGGTATGTCCCTATATTAAACGAACGTGTCATCACCTG
GTTCCCAGGAGAGCTCTGTACGTATTTGCAGCACATATTCTTTGACATAT
TATATTTAAAGTGTCTATATTTTGATATATTCTGATCGTGTGACCGCGCG
CTCCCGCCGTGGTTATTTTTGTCCTCAGGTAAGACCGTGAACCCGTTCGC
GAAAAGCCTTCTACACAAGGAGGCAGAGATGAAGAATGTATCGAAGCCGG
AGTCGGAACAGGTCAGTGGAGGGGAGCTCGCGGAGCAAGCCCCTGCCCAC
TGGCTTCTGGCTTGGTACGTCTGCGGAGGGCATGCGAAACCCCCCTCTCT
TCTGAGGGAAGCCGCGGAGGGCATGCAGCAGGCGGTAACGTGTCTCATGG
GATCGGGATCTTCGTTGGAGTTGGTTCTGGAGGTGGAGGAGGCGCTGGAA
TCAGCGGGACAGTCGGGACAG GTGGGCGGTGGCGGTTGGGGCGGTAACCC
TCGCCCTCGATTGCCTAGAAGATTGTGAGGGCATGACGAATACTACTGTA
CATGTTGCAGGGTAGTGAGGAAGTTCGCGGTTGGTTTTCCTCGATAGCGT
GACCCAATCCAAAGTCGTCGAAAGACCTGTTGCACACGTGACGCACCCAA
ATATATATTTCAACAGGAACTCGCACAAAGGCCGGGTATCAGAGTGCCTC
ATATATTTAACATTTAAGTTGCCGTTAAAGGATCAGGGCACAAGCGTGCA
AAAATGGATGTAAATATATATGAAGGTGAATGCTCAACAAACAAACAAAA
CGTTCCTGCTTTTTGTCTCAAAAGTCTCGCTTTTTTTCCCCCTTAATATT
ATGCTTCGAGCAGGGTATGGTGGGGGACATCTTTGAGCCCTGCTTGGGCG
TGGCGTGGTTGCTTACCTCTCGAGCAGCACTCGGTGAGTGCGAGAGAGTC
TTGGCGCGCAGCATCCTGCGGCAGGAGGACCTGGAAGGCGTGTTTGGGCC
GAGGAGGTCTTCCGACGCGCCTTTGCGTTCCAGAATGGAGGCGGTTCTGC
AAGGCCTCGCCGCGCTTGAG GTACGCGCGCGTTCTGCTCATTGTAATATT
ATTTGTGCCGGCGAATGCATGGTGTATCTGCTACAGTAACGCCCCCTCTT
CTTTATAAGGGGATTGATAACCGGTAGCCCCGCTCTCGATTTTGTCAACA
CCAAACGCCGAGAGTATCTAGACCTTGCCAAGATTTTCGTGGAGACCAGC
AGCTTGCTCCCTTGGTACAGTACCTTCTATGTGCTGCCGATAAATGTCTC
CTACTGTAAGAAGAGGAAGATACCTAAATTTTCCCCAGGGTCCATCTACA
AAGAGATGTCGCCAACGAGCGTGTAGGCATTGCTTGTTCGAAGCCTTTCC
CGGTTCCATTTTCGTGCAAGATTTTCTCATGACAACGGCGCGAAACGAAT
ACCCAGAACGGCGCAATAAACGCAATAAACGCAATACTCGGGCATTCCCC
CCAAAAATGAATGGGTATTCCCCCGACCTCTTGACCTAATAATGGACAGC
CGCGACACAATACTATACTATACCATACTAATGTTATTAATAGATATCTT
ATCATCCAAAAGACTTGCAAAATACGCTACCATACCCTTTTCCGTCCTGA
GATACATTTCAGGCTTGCCGAGCGTTGACAGCGGTTTATTTATAGTGAGC
GTACGCGCGCTCTCAAGTGTAACTCAACCCGAAGAGGTCACCACAGTCAA
ACCTACCCTGGAATTGGGTGCTGTTTTCCTCTGTCTACGGTTGTACGTAT
ATATGCCCTGTAAATGCTTTCTGTCGCGCATTAGGATATGGTGTGGTTGG
CCGGGCTCCAGCCTCCTTTGCTTCACGTCCACGACGGGCGAGATCTGAGA
GACCTCTTGGAGCGCGTGAGGGTTTGGCTCGAGGGGGTTGACGGTCGGTG
GCGGAGGACGAAAAATGAGATGGAGGCGTTAACCTATCGGAGCGACTCTG
TCGGCGGTGATGCTGATGCTGATATTGATGCTGGCACGGGCACCGACGCT
GCGGTGACAGTCGTGGCCGGGTGCAAGGTGTTGTTGGAAGACTTCGGTGA
CAGGAGAGACGGGATCTGCCGTGGTCTGGCGTCTTTGGTTGCTGCGGTGA
AGCCTCTGGCGCGCTGA AGGAAGCCAGGGTTAGCCACGGTAGGGTTATAT
GATAACTATGACCGTTGCTGCACCCCCCATACCGGTGCGCGTCTAGTGGA
GGGGCAGGTGATGTCATCCACGCCACGGTTCGCGCTGTTACGTGGAAACC
ATGCCAACTGTAGCTCGGACGCTGAAACGCACCCGCGTTTAGCCGCTGGT
GTGCGTTGCGAGCGTAGAGACTCTGGTTGACCTATTATATTAGTTAATAG
CGTCGGTCGTGTTTCTAGGAACTTGCCGACGAACCATTGCCCGAAATGCA
GTGGTAGAGATGGCAAAATCGCGACGATCTACGGTGTAATGATGTAGATC
TAATCAACAGGATGTCCTCTTACAGTATAGTATAGTAATGAGAGTATCGC
GTAAGAGTTCTACATGTAGCACCGTACACACAGATCCTGGAAGGTATTTC
ATAATGCTCTATGTTTTTATATTTGCTATGAGATAATGCTCTATGAGATA
ATTTGACCAATTCACGACCGCATAGAAAGTATTGTAAGCATTTGATCGAT
CATTTCTTTCAACTTTCAACTTGTTTTTCTAAAAAAACGAGCAGGTAAAA
TCCGCTTGTGTTTTCGGAGTTAGTTCAATGATAGGCTCTGTAATAGATGC
AAGTGGTTGCGATGCAATTTACCACCGGCTAGGCTGTATTACCGGATGTT
ATTCTAAACTGAAATTTATATTACCTGATACGTGGTATGTTGTGGTAAGG
TAATATGGAATGTGCGTCGTAACATAACTTAATATACTGCCCAGCAGACC
ACGTACCGAACTGGCAACCACGTACATTACTGGGTAAGGCTGAGGCCCGA
TCGATTAATGTGAAGAGCGCGCACACACACACACAAGCTCGAACCTCGC back to top Coding sequence (CDS) from alignment at P-canaliculata_contig974:16987..20785-
>mRNA_P-canaliculata_contig974.23824.1 ID=mRNA_P-canaliculata_contig974.23824.1|Name=mRNA_P-canaliculata_contig974.23824.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at P-canaliculata_contig974:16987..20785- (Pelvetia canaliculata dioecious) back to top