prot_P-canaliculata_contig94984.23511.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig94984.23511.1
Unique Nameprot_P-canaliculata_contig94984.23511.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length109
Homology
BLAST of mRNA_P-canaliculata_contig94984.23511.1 vs. uniprot
Match: A0A6J4F5B8_9PROT (Outer membrane protein and related peptidoglycan-associated (Lipo)proteins n=1 Tax=Magnetospirillum sp. UT-4 TaxID=2681467 RepID=A0A6J4F5B8_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 2.820e-6
Identity = 37/104 (35.58%), Postives = 50/104 (48.08%), Query Frame = 0
Query:    6 GRLRTELELSYRHNSFDFNFVGLPIANGNLSTTSGMANVMFDVIKIRKFNLYSGGGIGLIYGDLHQVTDGGAAVDDEAFAYQGILGVDRNIRNNMKGFVEYRYL 109
            G  + E EL YR             AN N+ + + M NV++D +   K++   G GIG  + D        A   D AFAYQGILG+  +I NN     +YRYL
Sbjct:   61 GAPKVEFELGYR-------------ANDNIDSLTTMVNVLYDFMPTSKWHPMVGAGIGWAFLD-GDFAGTNAKNSDNAFAYQGILGLGYDISNNFMLKTQYRYL 150          
BLAST of mRNA_P-canaliculata_contig94984.23511.1 vs. uniprot
Match: A0A2G5QJH2_9CAUL (OmpA-like domain-containing protein n=2 Tax=unclassified Caulobacter TaxID=2648921 RepID=A0A2G5QJH2_9CAUL)

HSP 1 Score: 51.6 bits (122), Expect = 2.680e-5
Identity = 36/91 (39.56%), Postives = 45/91 (49.45%), Query Frame = 0
Query:   32 NGNLSTTSGMANVMFDVIKIRKFNLYSGGGIGLI------YGDLHQVTDGGAAVD-------DEAFAYQGILGVDRNIRNNMKGFVEYRYL 109
            +G+L  T+ MANV+FD+     FN Y G G G        YG L  V  GGA          D+AFAYQGI+G+  N   N    +  RYL
Sbjct:  122 DGSLKATTLMANVIFDLAPGGTFNPYIGAGAGTAWVHNKAYGQLSGVPAGGARFQNTNFDDVDQAFAYQGIVGLGWNFAQNWSMDLTGRYL 212          
BLAST of mRNA_P-canaliculata_contig94984.23511.1 vs. uniprot
Match: A0A2T9JJG2_9CAUL (OMP_b-brl domain-containing protein (Fragment) n=1 Tax=Caulobacter radicis TaxID=2172650 RepID=A0A2T9JJG2_9CAUL)

HSP 1 Score: 50.4 bits (119), Expect = 6.060e-5
Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = 0
Query:   32 NGNLSTTSGMANVMFDVIKIRKFNLYSGGGIGL------IYGDLHQVTDGGAAVD-------DEAFAYQGILGVDRNIRNNMKGFVEYRYL 109
            NG L  T+ MANV++D +    +  + G G+G       +YG L  V  GGA +        D+AFAYQG+LG+  ++  N    +  RYL
Sbjct:  128 NGELKATTLMANVIYDFLPDSSWRPFLGAGVGTAWVHNKVYGQLSGVPAGGARIQNTSIDDVDQAFAYQGLLGLAWDVTPNWSIDLTGRYL 218          
BLAST of mRNA_P-canaliculata_contig94984.23511.1 vs. uniprot
Match: A0A3G4XAE8_9CAUL (OmpA-like domain-containing protein n=9 Tax=Caulobacter TaxID=75 RepID=A0A3G4XAE8_9CAUL)

HSP 1 Score: 50.1 bits (118), Expect = 9.330e-5
Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = 0
Query:   32 NGNLSTTSGMANVMFDVIKIRKFNLYSGGGIGL------IYGDLHQVTDGGAAVD-------DEAFAYQGILGVDRNIRNNMKGFVEYRYL 109
            NG L  T+ MANV++D +    +  + G G+G       +YG L  V  G AA+        D+AFAYQG+LG+  ++  N    +  RYL
Sbjct:  128 NGELKATTLMANVIYDFLPDSSWRPFLGAGVGTAWVHNKVYGQLSGVPAGAAAIQNTSIDDVDQAFAYQGLLGLAWDVTPNWSIDLTGRYL 218          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig94984.23511.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6J4F5B8_9PROT2.820e-635.58Outer membrane protein and related peptidoglycan-a... [more]
A0A2G5QJH2_9CAUL2.680e-539.56OmpA-like domain-containing protein n=2 Tax=unclas... [more]
A0A2T9JJG2_9CAUL6.060e-535.16OMP_b-brl domain-containing protein (Fragment) n=1... [more]
A0A3G4XAE8_9CAUL9.330e-535.16OmpA-like domain-containing protein n=9 Tax=Caulob... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.160.20coord: 1..109
e-value: 9.8E-17
score: 63.2
IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelSUPERFAMILY56925OMPA-likecoord: 5..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig94984contigP-canaliculata_contig94984:804..1130 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig94984.23511.1mRNA_P-canaliculata_contig94984.23511.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig94984 804..1130 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig94984.23511.1 ID=prot_P-canaliculata_contig94984.23511.1|Name=mRNA_P-canaliculata_contig94984.23511.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=109bp
LGRRRGRLRTELELSYRHNSFDFNFVGLPIANGNLSTTSGMANVMFDVIK
IRKFNLYSGGGIGLIYGDLHQVTDGGAAVDDEAFAYQGILGVDRNIRNNM
KGFVEYRYL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011250OMP/PagP_b-brl