mRNA_P-canaliculata_contig94984.23511.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig94984.23511.1
Unique NamemRNA_P-canaliculata_contig94984.23511.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig94984.23511.1 vs. uniprot
Match: A0A6J4F5B8_9PROT (Outer membrane protein and related peptidoglycan-associated (Lipo)proteins n=1 Tax=Magnetospirillum sp. UT-4 TaxID=2681467 RepID=A0A6J4F5B8_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 2.820e-6
Identity = 37/104 (35.58%), Postives = 50/104 (48.08%), Query Frame = 1 
Query:   16 GRLRTELELSYRHNSFDFNFVGLPIANGNLSTTSGMANVMFDVIKIRKFNLYSGGGIGLIYGDLHQVTDGGAAVDDEAFAYQGILGVDRNIRNNMKGFVEYRYL 327
            G  + E EL YR             AN N+ + + M NV++D +   K++   G GIG  + D        A   D AFAYQGILG+  +I NN     +YRYL
Sbjct:   61 GAPKVEFELGYR-------------ANDNIDSLTTMVNVLYDFMPTSKWHPMVGAGIGWAFLD-GDFAGTNAKNSDNAFAYQGILGLGYDISNNFMLKTQYRYL 150
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BLAST of mRNA_P-canaliculata_contig94984.23511.1 vs. uniprot
Match: A0A2G5QJH2_9CAUL (OmpA-like domain-containing protein n=2 Tax=unclassified Caulobacter TaxID=2648921 RepID=A0A2G5QJH2_9CAUL)

HSP 1 Score: 51.6 bits (122), Expect = 2.680e-5
Identity = 36/91 (39.56%), Postives = 45/91 (49.45%), Query Frame = 1 
Query:   94 NGNLSTTSGMANVMFDVIKIRKFNLYSGGGIGLI------YGDLHQVTDGGAAVD-------DEAFAYQGILGVDRNIRNNMKGFVEYRYL 327
            +G+L  T+ MANV+FD+     FN Y G G G        YG L  V  GGA          D+AFAYQGI+G+  N   N    +  RYL
Sbjct:  122 DGSLKATTLMANVIFDLAPGGTFNPYIGAGAGTAWVHNKAYGQLSGVPAGGARFQNTNFDDVDQAFAYQGIVGLGWNFAQNWSMDLTGRYL 212
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BLAST of mRNA_P-canaliculata_contig94984.23511.1 vs. uniprot
Match: A0A2T9JJG2_9CAUL (OMP_b-brl domain-containing protein (Fragment) n=1 Tax=Caulobacter radicis TaxID=2172650 RepID=A0A2T9JJG2_9CAUL)

HSP 1 Score: 50.4 bits (119), Expect = 6.060e-5
Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = 1 
Query:   94 NGNLSTTSGMANVMFDVIKIRKFNLYSGGGIGL------IYGDLHQVTDGGAAVD-------DEAFAYQGILGVDRNIRNNMKGFVEYRYL 327
            NG L  T+ MANV++D +    +  + G G+G       +YG L  V  GGA +        D+AFAYQG+LG+  ++  N    +  RYL
Sbjct:  128 NGELKATTLMANVIYDFLPDSSWRPFLGAGVGTAWVHNKVYGQLSGVPAGGARIQNTSIDDVDQAFAYQGLLGLAWDVTPNWSIDLTGRYL 218
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BLAST of mRNA_P-canaliculata_contig94984.23511.1 vs. uniprot
Match: A0A3G4XAE8_9CAUL (OmpA-like domain-containing protein n=9 Tax=Caulobacter TaxID=75 RepID=A0A3G4XAE8_9CAUL)

HSP 1 Score: 50.1 bits (118), Expect = 9.330e-5
Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = 1 
Query:   94 NGNLSTTSGMANVMFDVIKIRKFNLYSGGGIGL------IYGDLHQVTDGGAAVD-------DEAFAYQGILGVDRNIRNNMKGFVEYRYL 327
            NG L  T+ MANV++D +    +  + G G+G       +YG L  V  G AA+        D+AFAYQG+LG+  ++  N    +  RYL
Sbjct:  128 NGELKATTLMANVIYDFLPDSSWRPFLGAGVGTAWVHNKVYGQLSGVPAGAAAIQNTSIDDVDQAFAYQGLLGLAWDVTPNWSIDLTGRYL 218
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig94984.23511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6J4F5B8_9PROT2.820e-635.58Outer membrane protein and related peptidoglycan-a... [more]
A0A2G5QJH2_9CAUL2.680e-539.56OmpA-like domain-containing protein n=2 Tax=unclas... [more]
A0A2T9JJG2_9CAUL6.060e-535.16OMP_b-brl domain-containing protein (Fragment) n=1... [more]
A0A3G4XAE8_9CAUL9.330e-535.16OmpA-like domain-containing protein n=9 Tax=Caulob... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig94984contigP-canaliculata_contig94984:804..1130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue7.5e-07
Seed eggNOG ortholog1110502.TMO_1339
EggNOG free text desc.Outer membrane protein beta-barrel domain
EggNOG OGs1NGKR@1224,2JZJ1@204441,2UGKC@28211,COG3637@1,COG3637@2
COG Functional cat.M
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817314.891975-CDS-P-canaliculata_contig94984:803..11301622817314.891975-CDS-P-canaliculata_contig94984:803..1130Pelvetia canaliculata dioeciousCDSP-canaliculata_contig94984 804..1130 -
1693495218.6374211-CDS-P-canaliculata_contig94984:803..11301693495218.6374211-CDS-P-canaliculata_contig94984:803..1130Pelvetia canaliculata dioeciousCDSP-canaliculata_contig94984 804..1130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig94984.23511.1prot_P-canaliculata_contig94984.23511.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig94984 804..1130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig94984.23511.1

>prot_P-canaliculata_contig94984.23511.1 ID=prot_P-canaliculata_contig94984.23511.1|Name=mRNA_P-canaliculata_contig94984.23511.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=109bp
LGRRRGRLRTELELSYRHNSFDFNFVGLPIANGNLSTTSGMANVMFDVIK
IRKFNLYSGGGIGLIYGDLHQVTDGGAAVDDEAFAYQGILGVDRNIRNNM
KGFVEYRYL
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mRNA from alignment at P-canaliculata_contig94984:804..1130-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig94984.23511.1 ID=mRNA_P-canaliculata_contig94984.23511.1|Name=mRNA_P-canaliculata_contig94984.23511.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=327bp|location=Sequence derived from alignment at P-canaliculata_contig94984:804..1130- (Pelvetia canaliculata dioecious)
CTGGGACGACGCCGCGGACGACTTCGTACAGAATTGGAATTGAGTTATCG
GCATAACTCTTTCGATTTCAACTTTGTCGGGCTTCCCATTGCCAACGGTA
ATTTATCGACCACGTCAGGGATGGCTAACGTGATGTTTGACGTTATAAAA
ATCCGAAAATTTAATCTCTACTCAGGCGGTGGAATTGGATTGATCTATGG
TGACTTACACCAAGTGACCGATGGTGGTGCCGCTGTTGACGACGAAGCAT
TTGCCTATCAGGGAATACTCGGCGTTGACCGTAACATCCGCAACAACATG
AAGGGGTTCGTTGAGTACAGATATCTC
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Coding sequence (CDS) from alignment at P-canaliculata_contig94984:804..1130-

>mRNA_P-canaliculata_contig94984.23511.1 ID=mRNA_P-canaliculata_contig94984.23511.1|Name=mRNA_P-canaliculata_contig94984.23511.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at P-canaliculata_contig94984:804..1130- (Pelvetia canaliculata dioecious)
CTGGGACGACGCCGCGGACGACTTCGTACAGAATTGGAATTGAGTTATCG
GCATAACTCTTTCGATTTCAACTTTGTCGGGCTTCCCATTGCCAACGGTA
ATTTATCGACCACGTCAGGGATGGCTAACGTGATGTTTGACGTTATAAAA
ATCCGAAAATTTAATCTCTACTCAGGCGGTGGAATTGGATTGATCTATGG
TGACTTACACCAAGTGACCGATGGTGGTGCCGCTGTTGACGACGAAGCAT
TTGCCTATCAGGGAATACTCGGCGTTGACCGTAACATCCGCAACAACATG
AAGGGGTTCGTTGAGTACAGATATCTCCTGGGACGACGCCGCGGACGACT
TCGTACAGAATTGGAATTGAGTTATCGGCATAACTCTTTCGATTTCAACT
TTGTCGGGCTTCCCATTGCCAACGGTAATTTATCGACCACGTCAGGGATG
GCTAACGTGATGTTTGACGTTATAAAAATCCGAAAATTTAATCTCTACTC
AGGCGGTGGAATTGGATTGATCTATGGTGACTTACACCAAGTGACCGATG
GTGGTGCCGCTGTTGACGACGAAGCATTTGCCTATCAGGGAATACTCGGC
GTTGACCGTAACATCCGCAACAACATGAAGGGGTTCGTTGAGTACAGATA
TCTC
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