prot_P-canaliculata_contig10173.264.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10173.264.1
Unique Nameprot_P-canaliculata_contig10173.264.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length618
Homology
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BLAST of mRNA_P-canaliculata_contig10173.264.1 vs. uniprot
Match: D8LPM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM4_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.270e-27
Identity = 86/210 (40.95%), Postives = 119/210 (56.67%), Query Frame = 0 
Query:   11 DSFVDGDGAQQAR-RRRFQTGLLIFLLLFFMDARPPQDA-SRSKRSAQA---TRNKATMAETVKQLAENLEG--ISQGDYVAMREKASITASWSIKDAKDVQTIVPAMEKATSGANRSSPFEVRPDRGNDTIDSFRTEKDVPGEMTRF----EITDNHDVSAVRGWLKLGKHLTGNFKGENAAFEGLFFHRFGYMSALVGVNTEELRLVW 209
            + F D DG +QAR RRRFQTGL+IFLL FFMDAR PQ+  +R KR+AQA    +N+     TV +LAE L    + QG   A+R  + I   W + DA+  +T+VPAM+ A       S   +  D  ++TI    TE              +   N +VS V G L +G   T +  G +  FEGLFFH++G+MSA+VG + +EL++VW
Sbjct:    3 NEFGDDDGLRQARSRRRFQTGLVIFLLFFFMDARTPQETQNRGKRAAQARTSAKNQEVTRTTVHRLAEGLLDHIVPQGPTYALRSSSEIKGEWRLSDAESFRTVVPAMKAADPSEGSGSKHRL--DLRDETIAPSDTETAHSSHSRMMASLVQAKGNPEVSIVHGTLNVGDAATKS-SGVDTLFEGLFFHKYGHMSAVVGASGDELKVVW 209
[Close]
BLAST of mRNA_P-canaliculata_contig10173.264.1 vs. uniprot
Match: A0A6H5JDM9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM9_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.860e-27
Identity = 85/210 (40.48%), Postives = 125/210 (59.52%), Query Frame = 0 
Query:   11 DSFVDGDGAQQAR-RRRFQTGLLIFLLLFFMDARPPQDAS-RSKRSAQA---TRNKATMAETVKQLAENLEG--ISQGDYVAMREKASITASWSIKDAKDVQTIVPAMEKA--TSGANRSSPFEVRPDR--GNDTIDSFRTEKDVPGEMTRFEITDNHDVSAVRGWLKLGKHLTGNFKGENAAFEGLFFHRFGYMSALVGVNTEELRLVW 209
            + F D DG +QAR RRRFQTGL+IFLL FFMDAR PQ+   R KR+AQA    +N+     TV +LAE L    + QG   A+R  ++I   W + DA+  +T+VPAM+ A  + G+      ++R +    +DT  +  +   +   + + +   N +VS V G L +G   T +  G +  FEGLFFH+FG+MSA+VG + +EL++VW
Sbjct:    3 NEFGDDDGLRQARSRRRFQTGLVIFLLFFFMDARTPQETQDRGKRAAQARTSAKNQEVTRTTVHRLAEGLLDHIVPQGPTYALRSSSNIKGEWRLSDAESFRTVVPAMKAADPSEGSGSKHRLDLRDETIAPSDTETAHFSHSHMMASLVQAK--GNPEVSIVHGTLNVGGAATKS--GVDTLFEGLFFHKFGHMSAVVGASGDELKVVW 208
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10173.264.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPM4_ECTSI1.270e-2740.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDM9_9PHAE1.860e-2740.48RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 27..38
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..618
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..42
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 39..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10173contigP-canaliculata_contig10173:1698..5814 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10173.264.1mRNA_P-canaliculata_contig10173.264.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10173 1698..5814 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10173.264.1 ID=prot_P-canaliculata_contig10173.264.1|Name=mRNA_P-canaliculata_contig10173.264.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=618bp
MRLCRNRNRWDSFVDGDGAQQARRRRFQTGLLIFLLLFFMDARPPQDASR
SKRSAQATRNKATMAETVKQLAENLEGISQGDYVAMREKASITASWSIKD
AKDVQTIVPAMEKATSGANRSSPFEVRPDRGNDTIDSFRTEKDVPGEMTR
FEITDNHDVSAVRGWLKLGKHLTGNFKGENAAFEGLFFHRFGYMSALVGV
NTEELRLVWDVSDSASVPHGVVAPNASVDDRLASDAVGGSGAAAANVTIE
GAGFGGGNSGNESSAVDDSNLEDAGKEDYTVDEDSAKRERVLRVVGGAGP
GQGQQNRPYSAGDERSGRAQPEATDRVTWRASEDQLVKGAGERLRGRGGK
RDGLDGLRGVRRGQWGKVSEQGERVRRGRTQPSHEQDGVAHDDATRNRDD
GGGRQRHLDATKVTPAPTTAKLLFSAENITVAEPGVALQALDSAQSAGIV
PVAMMGADEGAVKGERANGLGSLREFPAMVLPKSVVVGHGQNSGPFPSQF
YSLSSGFKSNCQYLLTLQVLKVAYTKRNIMGLVHHNSTPRTRQDVPQRAQ
ERGSQWPSRTVEAWCITVVSRMKFLCRWADERWRCVKYCAFRRTGHLRLR
HVRNYNVILRLAHGARRG
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