mRNA_P-canaliculata_contig10173.264.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10173.264.1 vs. uniprot
Match: D8LPM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM4_ECTSI) HSP 1 Score: 129 bits (324), Expect = 1.270e-27 Identity = 86/210 (40.95%), Postives = 119/210 (56.67%), Query Frame = 1 Query: 31 DSFVDGDGAQQAR-RRRFQTGLLIFLLLFFMDARPPQDA-SRSKRSAQA---TRNKATMAETVKQLAENLEG--ISQGDYVAMREKASITASWSIKDAKDVQTIVPAMEKATSGANRSSPFEVRPDRGNDTIDSFRTEKDVPGEMTRF----EITDNHDVSAVRGWLKLGKHLTGNFKGENAAFEGLFFHRFGYMSALVGVNTEELRLVW 627
+ F D DG +QAR RRRFQTGL+IFLL FFMDAR PQ+ +R KR+AQA +N+ TV +LAE L + QG A+R + I W + DA+ +T+VPAM+ A S + D ++TI TE + N +VS V G L +G T + G + FEGLFFH++G+MSA+VG + +EL++VW
Sbjct: 3 NEFGDDDGLRQARSRRRFQTGLVIFLLFFFMDARTPQETQNRGKRAAQARTSAKNQEVTRTTVHRLAEGLLDHIVPQGPTYALRSSSEIKGEWRLSDAESFRTVVPAMKAADPSEGSGSKHRL--DLRDETIAPSDTETAHSSHSRMMASLVQAKGNPEVSIVHGTLNVGDAATKS-SGVDTLFEGLFFHKYGHMSAVVGASGDELKVVW 209
BLAST of mRNA_P-canaliculata_contig10173.264.1 vs. uniprot
Match: A0A6H5JDM9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM9_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.860e-27 Identity = 85/210 (40.48%), Postives = 125/210 (59.52%), Query Frame = 1 Query: 31 DSFVDGDGAQQAR-RRRFQTGLLIFLLLFFMDARPPQDAS-RSKRSAQA---TRNKATMAETVKQLAENLEG--ISQGDYVAMREKASITASWSIKDAKDVQTIVPAMEKA--TSGANRSSPFEVRPDR--GNDTIDSFRTEKDVPGEMTRFEITDNHDVSAVRGWLKLGKHLTGNFKGENAAFEGLFFHRFGYMSALVGVNTEELRLVW 627
+ F D DG +QAR RRRFQTGL+IFLL FFMDAR PQ+ R KR+AQA +N+ TV +LAE L + QG A+R ++I W + DA+ +T+VPAM+ A + G+ ++R + +DT + + + + + + N +VS V G L +G T + G + FEGLFFH+FG+MSA+VG + +EL++VW
Sbjct: 3 NEFGDDDGLRQARSRRRFQTGLVIFLLFFFMDARTPQETQDRGKRAAQARTSAKNQEVTRTTVHRLAEGLLDHIVPQGPTYALRSSSNIKGEWRLSDAESFRTVVPAMKAADPSEGSGSKHRLDLRDETIAPSDTETAHFSHSHMMASLVQAK--GNPEVSIVHGTLNVGGAATKS--GVDTLFEGLFFHKFGHMSAVVGASGDELKVVW 208 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10173.264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10173.264.1 >prot_P-canaliculata_contig10173.264.1 ID=prot_P-canaliculata_contig10173.264.1|Name=mRNA_P-canaliculata_contig10173.264.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=618bp MRLCRNRNRWDSFVDGDGAQQARRRRFQTGLLIFLLLFFMDARPPQDASRback to top mRNA from alignment at P-canaliculata_contig10173:1698..5814+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10173.264.1 ID=mRNA_P-canaliculata_contig10173.264.1|Name=mRNA_P-canaliculata_contig10173.264.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4117bp|location=Sequence derived from alignment at P-canaliculata_contig10173:1698..5814+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10173:1698..5814+ >mRNA_P-canaliculata_contig10173.264.1 ID=mRNA_P-canaliculata_contig10173.264.1|Name=mRNA_P-canaliculata_contig10173.264.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3708bp|location=Sequence derived from alignment at P-canaliculata_contig10173:1698..5814+ (Pelvetia canaliculata dioecious)back to top |