prot_P-canaliculata_contig101442.237.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig101442.237.1
Unique Name	prot_P-canaliculata_contig101442.237.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	173

Homology

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BLAST of mRNA_P-canaliculata_contig101442.237.1 vs. uniprot
Match: A0A517ZN86_9PLAN (Uncharacterized protein n=1 Tax=Symmachiella dynata TaxID=2527995 RepID=A0A517ZN86_9PLAN)

HSP 1 Score: 67.0 bits (162), Expect = 1.110e-10
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 0

Query:  105 EDDSLI-QKLLGIFQTTSIIRLALIEGAVFFNFMMFMTENHPVNLGIGVFGLLLLLIAIPFPTRVWSWVE 173
            E DS++ Q+L G++Q +SII  A++EGA+F N   + TE HPVNL IG   +LLLL +IP  +R+ +WVE
Sbjct:   99 ESDSVVFQQLYGVYQYSSIIAAAILEGAIFLNLFAYFTEGHPVNLVIGGAFILLLLTSIPTASRIQNWVE 168

[Close]

BLAST of mRNA_P-canaliculata_contig101442.237.1 vs. uniprot
Match: A0A2E7NJ41_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7NJ41_9PLAN)

HSP 1 Score: 50.8 bits (120), Expect = 7.810e-5
Identity = 29/64 (45.31%), Postives = 44/64 (68.75%), Query Frame = 0

Query:  112 KLLGIFQTTSIIRLALIEGAVFFNFMMFMTENHPVNLGIGVFGLLLLLIAIPFPTR--VWSWVE 173
            +LLG++Q   I+ LAL+EGA FFN ++F  E+H  +L +G  G+LLLL+   +PTR  + SW+ 
Sbjct:   83 ELLGLYQVRLIVGLALLEGAAFFNILVFSMEHHWASLMVG--GILLLLMLPRWPTRSKIESWIR 144

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig101442.237.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig101442.237.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A517ZN86_9PLAN	1.110e-10	50.00	Uncharacterized protein n=1 Tax=Symmachiella dynat...	[more]
A0A2E7NJ41_9PLAN	7.810e-5	45.31	Uncharacterized protein n=1 Tax=Planctomycetaceae ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 52..75
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 76..121
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 41..51
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 122..140
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..15
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 146..164
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 16..40
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 141..145
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 165..173
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..29 score: 5.0
None	No IPR available	TMHMM	TMhelix		coord: 53..75
None	No IPR available	TMHMM	TMhelix		coord: 149..171
None	No IPR available	TMHMM	TMhelix		coord: 122..139
None	No IPR available	TMHMM	TMhelix		coord: 16..38

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig101442	contig	P-canaliculata_contig101442:138..656 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig101442.237.1	mRNA_P-canaliculata_contig101442.237.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig101442 138..656 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig101442.237.1 ID=prot_P-canaliculata_contig101442.237.1|Name=mRNA_P-canaliculata_contig101442.237.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=173bp
MISDSVRSAFEPQTRVMLIIGAAMFLGACFFGVFVCAMADWAELKNVQAM
DIFQWVGIALGIGAFSASFIVPFFVRSAAVKELDSPLASPSQSGISSQRI
GSMDEDDSLIQKLLGIFQTTSIIRLALIEGAVFFNFMMFMTENHPVNLGI
GVFGLLLLLIAIPFPTRVWSWVE