prot_P-canaliculata_contig10121.210.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10121.210.1
Unique Nameprot_P-canaliculata_contig10121.210.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length428
Homology
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BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Match: D8LSI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI2_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 8.620e-83
Identity = 150/296 (50.68%), Postives = 192/296 (64.86%), Query Frame = 0 
Query:   30 QTLIDTAGTHVFHLDLHLRRRSPSNSSPNNASSVRWFEGFGETMQAGSAAAAVATLSHPIRRMLSFLLKEEVGLEEALFWTEGQGD---------QGYQLLDNYLVRVLAGQSTWELPPGAVGEAEFHKAKIALGKFEVLLRADCLAVDLPLLGPYIGRVFSAH---NALEITSAGIDAEISPVLTPGPIAESLIRRNRWDLQLWDYGESLIMSRSTTLDSYLCSKQTWATKERQPGTGRRAAVFNSPDFHATSLAMFSCVLVSWGFHVTAIVKKPQVGFEELLPCPQKIISL-EH 312
            +TLID   ++++HLDL +++  P ++S   A    WF+GFG     G    A  T+ HPI+R+L  L  E VGLEE + W E  G          QGYQ LDNYLVRVLAG+S W+LPPG VG++E   A+IALGKFEVLLRADCLAVDLPLL PY+ +   A    +A   T   +++  +  L  G     L+R NRWDLQLWD+   L+ SRSTT + YLC     A ++R PG GRRA V+NSP FH T +AMFSCVL+S GF VTA+VK+P  GFE LLPCP ++++L EH
Sbjct:   39 RTLIDGTDSNIYHLDLLVQQ--PYDASTTTAQPP-WFDGFG-----GRDGVAAVTVGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKSELQAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAHYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSASARRQRMPGDGRRAVVYNSPSFHITGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCPDRVVALSEH 326
[Close]
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Match: A0A6H5KKJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ1_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 1.830e-82
Identity = 155/322 (48.14%), Postives = 199/322 (61.80%), Query Frame = 0 
Query:   30 QTLIDTAGTHVFHLDLHLRRRSPSNSSPNNASSVRWFEGFGETMQAGSAAAAVATLSHPIRRMLSFLLKEEVGLEEALFWTEGQGD---------QGYQLLDNYLVRVLAGQSTWELPPGAVGEAEFH----KAKIALGKFEVLLRADCLAVDLPLLGPYIGRVFSAH---NALEITSAGIDAEISPVLTPGPIAESLIRRNRWDLQLWDYGESLIMSRSTTLDSYLCSKQTWATKERQPGTGRRAAVFNSPDFHATSLAMFSCVLVSWGFHVTAIVKKPQVGFEELLPCPQKIISL-EHAITSRDSYRMVNSSVSQLLGLP 334
            +TLID   + + HLDL +++  P ++SP  A    WF+GFG     G    A  T+ HPI+R+L  L  E VGLEE + W E  G          QGYQ LDNYLVRVLAG+S W+LPPG VG+ E       A+IALGKFEVLLRADCLAVDLPLL PY+ +   A    +A   T   +++  +  L  G     L+R NRWDLQLWD+   L+ SRSTT + YLC   T A ++R PG GRRA V+NSP FH T +AMFSCVL+S GF VTA+VK+P  GFE LLPCP ++++L EH +       +++   +  L LP
Sbjct:   39 RTLIDGTDSSIHHLDLLVQQ--PYDASPTTAQPP-WFDGFG-----GRDGVAAVTIGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKTELQVGIPAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAYYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSTSARRQRMPGDGRRAVVYNSPSFHVTGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCPDRVVALSEHYLRDLPG-EILDEEAAAALSLP 351
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSI2_ECTSI8.620e-8350.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKJ1_9PHAE1.830e-8248.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..427
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.625

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10121contigP-canaliculata_contig10121:2248..6392 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10121.210.1mRNA_P-canaliculata_contig10121.210.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10121 1231..10794 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10121.210.1 ID=prot_P-canaliculata_contig10121.210.1|Name=mRNA_P-canaliculata_contig10121.210.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=428bp
MAPTPFTVVSSIVFAVATSVVVCTDTSVVQTLIDTAGTHVFHLDLHLRRR
SPSNSSPNNASSVRWFEGFGETMQAGSAAAAVATLSHPIRRMLSFLLKEE
VGLEEALFWTEGQGDQGYQLLDNYLVRVLAGQSTWELPPGAVGEAEFHKA
KIALGKFEVLLRADCLAVDLPLLGPYIGRVFSAHNALEITSAGIDAEISP
VLTPGPIAESLIRRNRWDLQLWDYGESLIMSRSTTLDSYLCSKQTWATKE
RQPGTGRRAAVFNSPDFHATSLAMFSCVLVSWGFHVTAIVKKPQVGFEEL
LPCPQKIISLEHAITSRDSYRMVNSSVSQLLGLPAWTPDGQDGESGPLKL
EAELAINVDANVEPGGRERNTPWIQGSWMLCCGILRLPSGTCTALRGRWP
TEVSRQRLKSLRGKRPLPTEECLLQRF*
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