mRNA_P-canaliculata_contig10121.210.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Match: D8LSI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI2_ECTSI) HSP 1 Score: 278 bits (712), Expect = 1.490e-75 Identity = 150/296 (50.68%), Postives = 192/296 (64.86%), Query Frame = 2 Query: 866 QTLIDTAGTHVFHLDLHLRRRSPSNSSPNNASSVRWFEGFGETMQAGSAAAAVATLSHPIRRMLSFLLKEEVGLEEALFWTEGQGD---------QGYQLLDNYLVRVLAGQSTWELPPGAVGEAEFHKAKIALGKFEVLLRADCLAVDLPLLGPYIGRVFSAH---NALEITSAGIDAEISPVLTPGPIAESLIRRNRWDLQLWDYGESLIMSRSTTLDSYLCSKQTWATKERQPGTGRRAAVFNSPDFHATSLAMFSCVLVSWGFHVTAIVKKPQVGFEELLPCPQKIISL-EH 1714
+TLID ++++HLDL +++ P ++S A WF+GFG G A T+ HPI+R+L L E VGLEE + W E G QGYQ LDNYLVRVLAG+S W+LPPG VG++E A+IALGKFEVLLRADCLAVDLPLL PY+ + A +A T +++ + L G L+R NRWDLQLWD+ L+ SRSTT + YLC A ++R PG GRRA V+NSP FH T +AMFSCVL+S GF VTA+VK+P GFE LLPCP ++++L EH
Sbjct: 39 RTLIDGTDSNIYHLDLLVQQ--PYDASTTTAQPP-WFDGFG-----GRDGVAAVTVGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKSELQAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAHYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSASARRQRMPGDGRRAVVYNSPSFHITGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCPDRVVALSEH 326
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Match: A0A6H5KKJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ1_9PHAE) HSP 1 Score: 276 bits (706), Expect = 2.480e-75 Identity = 155/322 (48.14%), Postives = 199/322 (61.80%), Query Frame = 2 Query: 866 QTLIDTAGTHVFHLDLHLRRRSPSNSSPNNASSVRWFEGFGETMQAGSAAAAVATLSHPIRRMLSFLLKEEVGLEEALFWTEGQGD---------QGYQLLDNYLVRVLAGQSTWELPPGAVGEAEFH----KAKIALGKFEVLLRADCLAVDLPLLGPYIGRVFSAH---NALEITSAGIDAEISPVLTPGPIAESLIRRNRWDLQLWDYGESLIMSRSTTLDSYLCSKQTWATKERQPGTGRRAAVFNSPDFHATSLAMFSCVLVSWGFHVTAIVKKPQVGFEELLPCPQKIISL-EHAITSRDSYRMVNSSVSQLLGLP 1780
+TLID + + HLDL +++ P ++SP A WF+GFG G A T+ HPI+R+L L E VGLEE + W E G QGYQ LDNYLVRVLAG+S W+LPPG VG+ E A+IALGKFEVLLRADCLAVDLPLL PY+ + A +A T +++ + L G L+R NRWDLQLWD+ L+ SRSTT + YLC T A ++R PG GRRA V+NSP FH T +AMFSCVL+S GF VTA+VK+P GFE LLPCP ++++L EH + +++ + L LP
Sbjct: 39 RTLIDGTDSSIHHLDLLVQQ--PYDASPTTAQPP-WFDGFG-----GRDGVAAVTIGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKTELQVGIPAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAYYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSTSARRQRMPGDGRRAVVYNSPSFHVTGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCPDRVVALSEHYLRDLPG-EILDEEAAAALSLP 351
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Match: A0A6H5KJA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA8_9PHAE) HSP 1 Score: 241 bits (616), Expect = 2.000e-68 Identity = 114/178 (64.04%), Postives = 137/178 (76.97%), Query Frame = 2 Query: 2717 VQGKLESVRRDYQGLFSCLEEMCLSGRGDFEIEAVGSSGSMLNELDRHPCTNARYKEGRDLRYSDFYSRISAGHFVVTATAGHDYEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHRMVANDDLCLNLHAAYDLTQADYDEMELEARDCKLRMWKQTRETVAEMVSGWVVD 3250
VQG ++S RR+Y L CLE MC +GR ++++ AVG+ G + +++ R C R E R L Y +FY+ ISA HFVVTA AGHDYE+D+ATS+VPTALLLERPLV+SS LLDAYPCL+ SRVH MVANDDLCLNL AYDLT +YDEMELEARDCKL MW+ RETVA M SGW +D
Sbjct: 88 VQGNMQSHRRNYPELTRCLEAMCSTGRDNYQLVAVGARGDLPDDVRRMQCVEQRTTEWRHLEYPEFYANISAAHFVVTAAAGHDYEYDKATSTVPTALLLERPLVISSTLLDAYPCLRKSRVHSMVANDDLCLNLQTAYDLTTEEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 265
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Match: D8LSI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI3_ECTSI) HSP 1 Score: 234 bits (597), Expect = 3.510e-67 Identity = 110/174 (63.22%), Postives = 134/174 (77.01%), Query Frame = 2 Query: 2729 LESVRRDYQGLFSCLEEMCLSGRGDFEIEAVGSSGSMLNELDRHPCTNARYKEGRDLRYSDFYSRISAGHFVVTATAGHDYEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHRMVANDDLCLNLHAAYDLTQADYDEMELEARDCKLRMWKQTRETVAEMVSGWVVD 3250
++S RR+Y L CLE MC +GR ++++ AVG+ G + +++ C R E R L Y +FY+ ISAGHFVVTA AGH YE+D+ATS+VPTALLLERPLVMSS LLDAYPCL+ SRVH MVANDDLC+NL AYDLT+ +YDEMELEARDCKL MW+ RETVA M SGW +D
Sbjct: 1 MQSHRRNYPELTRCLEAMCSTGRDNYQLVAVGARGDLPDDVSAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHGYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVANDDLCVNLQTAYDLTREEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 174
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Match: A0A482SI13_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI13_9ARCH) HSP 1 Score: 72.4 bits (176), Expect = 8.670e-11 Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 2 Query: 2891 RDLRYSDFYSRISAGHFVVT-ATAGHDYEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHRMVANDDLCLNLHAAYDLTQADYDEMELEARDCK 3187
R + + FY I+ F+VT A ++Y RA+SS+PTA++ E PLV+++ LL+ Y CL +HR VA+ D C L A LT + M E R CK
Sbjct: 15 RAVAHPYFYGAIARADFLVTFANPAYEYNITRASSSIPTAVMTEVPLVLTTDLLNKYDCLYGGSIHRRVADTDDCKALKNAIQLTDQERKTMREEIRRCK 114
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Match: A0A482SBI1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBI1_9ARCH) HSP 1 Score: 72.0 bits (175), Expect = 1.050e-9 Identity = 49/173 (28.32%), Postives = 80/173 (46.24%), Query Frame = 2 Query: 2699 SDRSRTVQGKLESVRRDYQGLFSCLEEMCLSGRGDFE----IEAVGSSGSMLNELDRHPCTNARYKE----GRDLRYSDFYSRISAGHFVVTATAGHD--YEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHRMVANDDLCLNLHAAYDLTQADYDEMELEARDCK 3187
+ R + G + RRDY GLF+C++E+ S + + V + S L D ++ DL + + ++ +FV+ + Y +R +S+VPTAL + PLV+ A L Y CLK+S +H VA C ++ A L+ AD + M E C+
Sbjct: 60 NTRLLVLPGTIRYNRRDYTGLFTCVDEISKSANDSTQKSLNFKVVVTGRSYLKAADGRVYIPEHLRQLIEIQADLPLQSYLTLLAQANFVLLFANNNQLGYNTNRISSTVPTALGVTTPLVLPQATLSLYACLKSSSMHNRVAGKTNCDSMKNALSLSHADAERMRQETALCR 232
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Match: A0A482SHX3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHX3_9ARCH) HSP 1 Score: 73.6 bits (179), Expect = 1.390e-9 Identity = 54/201 (26.87%), Postives = 94/201 (46.77%), Query Frame = 2 Query: 2717 VQGKLE-SVRRDYQGLFSCLEEMCLSGRGDFEIEAVGSSGSMLNELD-----RHPCTNARYKEGRDLRYSDFYSRISAGHFVVTATAGHDYEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHRMVANDDLCLNLHAAYDLTQADYDEMELEARDCKLRMWKQTRETVAEMVSGWVVD*DSGKAQNQPTRARPRP 3301
+QG L RRD+ LF+C+ E + R D E+ +G ++ L + T ++ + Y F+ +S+ + + + YE R TSS+PT+L+ P+++ + LL Y CL+N VHR + D C ++ A L +M E C ++ ++R T+ ++V G + + G N T P P
Sbjct: 216 LQGILTPGKRRDFNRLFACMIE--IKRRHDIELVLIGKVATLGANLTIPLKLSNITTVVKWPD-----YLGFFRNVSSADYAILFSKFDFYEHGRITSSIPTSLVSNLPIILPNKLLSDYACLRNQYVHRATSMADDCSSVKAVLSLRHERQQQMRNEVAFCVKQLLIESRATLHDIVFG--ENGNEGLDSNNGTLVIPDP 407 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10121.210.1 >prot_P-canaliculata_contig10121.210.1 ID=prot_P-canaliculata_contig10121.210.1|Name=mRNA_P-canaliculata_contig10121.210.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=428bp MAPTPFTVVSSIVFAVATSVVVCTDTSVVQTLIDTAGTHVFHLDLHLRRRback to top mRNA from alignment at P-canaliculata_contig10121:1231..10794+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10121.210.1 ID=mRNA_P-canaliculata_contig10121.210.1|Name=mRNA_P-canaliculata_contig10121.210.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=9564bp|location=Sequence derived from alignment at P-canaliculata_contig10121:1231..10794+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10121:1231..10794+ >mRNA_P-canaliculata_contig10121.210.1 ID=mRNA_P-canaliculata_contig10121.210.1|Name=mRNA_P-canaliculata_contig10121.210.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2568bp|location=Sequence derived from alignment at P-canaliculata_contig10121:1231..10794+ (Pelvetia canaliculata dioecious)back to top |