prot_P-canaliculata_contig101041.190.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig101041.190.1
Unique Nameprot_P-canaliculata_contig101041.190.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length118
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101041.190.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..63
e-value: 3.3E-8
score: 35.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 64..118
e-value: 1.6E-5
score: 26.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 3..116
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 3..29
e-value: 0.096
score: 13.0
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..64
score: 11.551
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 64..118
score: 7.307

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101041contigP-canaliculata_contig101041:247..600 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101041.190.1mRNA_P-canaliculata_contig101041.190.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig101041 247..600 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig101041.190.1 ID=prot_P-canaliculata_contig101041.190.1|Name=mRNA_P-canaliculata_contig101041.190.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=118bp
VARAESYIKNGQFKRAKSFLKKQLRKKPKNQRLNLLLGGVYSIEQKHKQA
VKYFRRSGKSVKKSRYGFYYGISFYAVKKCQQAVYGFKQVRKKNPEIFAD
SQFYIGVCYYNQRRFTLA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR019734TPR_repeat
IPR013026TPR-contain_dom