prot_P-canaliculata_contig101041.190.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig101041.190.1
Unique Name	prot_P-canaliculata_contig101041.190.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	118

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig101041.190.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig101041.190.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

ZOOM

x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 1..63 e-value: 3.3E-8 score: 35.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 64..118 e-value: 1.6E-5 score: 26.9
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 3..116
IPR019734	Tetratricopeptide repeat	PFAM	PF13181	TPR_8	coord: 3..29 e-value: 0.096 score: 13.0
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 1..64 score: 11.551
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 64..118 score: 7.307

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig101041	contig	P-canaliculata_contig101041:247..600 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig101041.190.1	mRNA_P-canaliculata_contig101041.190.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig101041 247..600 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig101041.190.1 ID=prot_P-canaliculata_contig101041.190.1|Name=mRNA_P-canaliculata_contig101041.190.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=118bp
VARAESYIKNGQFKRAKSFLKKQLRKKPKNQRLNLLLGGVYSIEQKHKQA
VKYFRRSGKSVKKSRYGFYYGISFYAVKKCQQAVYGFKQVRKKNPEIFAD
SQFYIGVCYYNQRRFTLA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR019734	TPR_repeat
IPR013026	TPR-contain_dom