prot_P-canaliculata_contig100933.178.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig100933.178.1
Unique Name	prot_P-canaliculata_contig100933.178.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	254

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig100933.178.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig100933.178.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

ZOOM

x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 1..254 e-value: 6.1E-19 score: 69.8
None	No IPR available	PANTHER	PTHR34630	FAMILY NOT NAMED	coord: 2..127 coord: 92..234
None	No IPR available	PANTHER	PTHR34630:SF9		coord: 92..234
None	No IPR available	PANTHER	PTHR34630:SF9		coord: 2..127
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 2..236

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig100933	contig	P-canaliculata_contig100933:162..923 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig100933.178.1	mRNA_P-canaliculata_contig100933.178.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig100933 162..929 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig100933.178.1 ID=prot_P-canaliculata_contig100933.178.1|Name=mRNA_P-canaliculata_contig100933.178.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=254bp
MLELRCTRLKKIDALSNVNLSYLLLDGCKKLTSLNPLKNVASLKELDVRD
CYGFKKIDLSDWKQRNLKKITVSDCDGLVVLNGFSQCSKRCELLIDNCNA
LKEIQIQDDSSLDSITVNRCPNLDSINGLPQALSELRIYFCGALTKVSGG
KIPNLDSVEIGACSKLVSFDRYLENVKYFKLIQCHGIKQLSLRQPMPRLA
SVSVEYCDGLIAIDGLPESVNKLKVTGCEALKRVTPTAGLPNLSEANFID
CPNL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf