mRNA_P-canaliculata_contig99912.24104.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99912.24104.1
Unique NamemRNA_P-canaliculata_contig99912.24104.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99912.24104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99912contigP-canaliculata_contig99912:87..558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size473
Cds size402
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817358.6024208-UTR-P-canaliculata_contig99912:86..1561622817358.6024208-UTR-P-canaliculata_contig99912:86..156Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99912 87..156 +
1693495245.8046777-UTR-P-canaliculata_contig99912:86..1561693495245.8046777-UTR-P-canaliculata_contig99912:86..156Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99912 87..156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817358.615128-CDS-P-canaliculata_contig99912:156..5581622817358.615128-CDS-P-canaliculata_contig99912:156..558Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99912 157..558 +
1693495245.8128388-CDS-P-canaliculata_contig99912:156..5581693495245.8128388-CDS-P-canaliculata_contig99912:156..558Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99912 157..558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99912.24104.1prot_P-canaliculata_contig99912.24104.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99912 157..558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99912.24104.1

>prot_P-canaliculata_contig99912.24104.1 ID=prot_P-canaliculata_contig99912.24104.1|Name=mRNA_P-canaliculata_contig99912.24104.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=134bp
MAARRSPQGSGPRAGASNPQTPAPAYSDRLSQLEKDVAEIRDCTIKEVLE
KLHRLGYEIQEVNSRFETDRRTGDSLEDLRVKVDDFGDEMRNLRRQVERG
SAPLPPPNQQAGTFPIPTYSGERSSLSRFLKQFY
back to top

mRNA from alignment at P-canaliculata_contig99912:87..558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99912.24104.1 ID=mRNA_P-canaliculata_contig99912.24104.1|Name=mRNA_P-canaliculata_contig99912.24104.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=472bp|location=Sequence derived from alignment at P-canaliculata_contig99912:87..558+ (Pelvetia canaliculata dioecious)
CGTGGTGAGCTTGCAGTAAGCTAGGGTTGTGGAATAGTCAAGTCCCTATC
TCAAGAAAATTCGAATTCAAATGGCTGCAAGGCGATCGCCGCAAGGTTCG
GGCCCTAGGGCAGGAGCCTCGAACCCCCAAACACCAGCCCCAGCATATAG
CGATAGGTTGTCGCAGCTGGAAAAGGATGTGGCCGAGATCAGGGACTGCA
CGATAAAGGAAGTGCTGGAGAAGCTTCATCGCCTGGGCTATGAGATTCAA
GAAGTGAACTCCAGGTTTGAAACTGATCGTCGTACAGGCGACTCGCTTGA
AGACTTAAGGGTAAAAGTAGACGATTTTGGAGATGAGATGAGAAATTTGA
GAAGACAAGTCGAGCGAGGCTCGGCACCATTGCCCCCACCGAACCAGCAG
GCGGGAACTTTCCCGATCCCCACGTACTCTGGGGAACGCAGCAGCCTATC
TAGGTTCTTGAAACAGTTTTAC
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig99912:87..558+

>mRNA_P-canaliculata_contig99912.24104.1 ID=mRNA_P-canaliculata_contig99912.24104.1|Name=mRNA_P-canaliculata_contig99912.24104.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at P-canaliculata_contig99912:87..558+ (Pelvetia canaliculata dioecious)
ATGGCTGCAAGGCGATCGCCGCAAGGTTCGGGCCCTAGGGCAGGAGCCTC
GAACCCCCAAACACCAGCCCCAGCATATAGCGATAGGTTGTCGCAGCTGG
AAAAGGATGTGGCCGAGATCAGGGACTGCACGATAAAGGAAGTGCTGGAG
AAGCTTCATCGCCTGGGCTATGAGATTCAAGAAGTGAACTCCAGGTTTGA
AACTGATCGTCGTACAGGCGACTCGCTTGAAGACTTAAGGGTAAAAGTAG
ACGATTTTGGAGATGAGATGAGAAATTTGAGAAGACAAGTCGAGCGAGGC
TCGGCACCATTGCCCCCACCGAACCAGCAGGCGGGAACTTTCCCGATCCC
CACGTACTCTGGGGAACGCAGCAGCCTATCTAGGTTCTTGAAACAGTTTT
ACATGGCTGCAAGGCGATCGCCGCAAGGTTCGGGCCCTAGGGCAGGAGCC
TCGAACCCCCAAACACCAGCCCCAGCATATAGCGATAGGTTGTCGCAGCT
GGAAAAGGATGTGGCCGAGATCAGGGACTGCACGATAAAGGAAGTGCTGG
AGAAGCTTCATCGCCTGGGCTATGAGATTCAAGAAGTGAACTCCAGGTTT
GAAACTGATCGTCGTACAGGCGACTCGCTTGAAGACTTAAGGGTAAAAGT
AGACGATTTTGGAGATGAGATGAGAAATTTGAGAAGACAAGTCGAGCGAG
GCTCGGCACCATTGCCCCCACCGAACCAGCAGGCGGGAACTTTCCCGATC
CCCACGTACTCTGGGGAACGCAGCAGCCTATCTAGGTTCTTGAAACAGTT
TTAC
back to top