mRNA_P-canaliculata_contig9979.24096.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: D7FWI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI0_ECTSI) HSP 1 Score: 353 bits (905), Expect = 3.650e-110 Identity = 220/422 (52.13%), Postives = 254/422 (60.19%), Query Frame = 1 Query: 4 RKEMTDTIKADLERLYPTGCGEHFLAPARQQLLLSVLSLWADLHTDTGYRQGMHELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGY----RHAPPSMYLGGLSDTAEDDHLRAGSSESGPAWLMDGGKTGGESGNGFSRRIPRSNSNHSREQQQRLRAEEEYGRGLGGA-------------GFGREGGIEARGGDMRNNWQQGLDEFTRRALSAAQDVAKRAVQTVERTQHGG--------GSAPGA----LARRLREVCAAMEAGKTSVHAAAEDIREVARLLEGRKEFNSGRRSSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVTRGFSTYSEDDGCADGLYTRDL 1182
RKEMTDTIKADLERL+PTGCG+HFLAPARQ+LLLSVLS+WADL+T+T YRQ LYGMKWARLMFGREFRVEGVL LWDHIFASS +EG+PD+PECIE VAVAMV+S+R +LLAED TGCLQLLMRYPPDQ VST I LS++L + R PS + S A E P WL GG+ G S R P + + A E+ R GG FGR+ +E + +NNWQQGLDEFTRRA+SAAQ VAK AVQTVERTQ GG G P + L+RRLR CA ME G+ V AA++I+EVAR+LE R S R S +GVTR FSTYSEDDGCAD LYT+DL
Sbjct: 90 RKEMTDTIKADLERLFPTGCGDHFLAPARQELLLSVLSVWADLNTETAYRQ----LYGMKWARLMFGREFRVEGVLVLWDHIFASSWIEGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPPDQGVSTAISLSLSLAKGQSLAAFERSTEPSSFAAASSGRAAPSSSSEIQQEPAPVWLNRGGRDHGS----VSGRSPSATGSAGH-------APSEWRRDDGGGXXVXXXXXXGRARAFGRDERLETER-EAKNNWQQGLDEFTRRAMSAAQGVAKLAVQTVERTQGGGDPRHLRTAGGVPASEALSLSRRLRTACAKMETGEAPVSLAAQEIKEVARILEARSGAPSVREPLRSTNSMGGGGGG-----------------------QGVTRAFSTYSEDDGCADALYTQDL 472
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A6H5KGW7_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW7_9PHAE) HSP 1 Score: 294 bits (753), Expect = 2.440e-85 Identity = 225/597 (37.69%), Postives = 259/597 (43.38%), Query Frame = 1 Query: 4 RKEMTDTIKADLERLYPTGCGEHFLAPARQQLLLSVLSLWADLHTDTGYRQGMHE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGY----RHAPPSMYLGGLSDTAEDDHLRAGSSESGPAWLMDGGKTGGESGNGF-SRRIPRSNSNHSREQQQRLRAEEEYGRGLGGA-------------GFGREGGIEARGGDMRNNWQQGLDEFTRRALSAAQDVAKRAVQTVERTQHGG--------GSAPGA----LARRLREVCAAMEAGKTSVHAAAEDIREVARLLEGRKEFNSGRRSSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVTRGFSTYSEDDGCADGLYTRDL 1182
RKEMTDTIKADLERL+PTGCG+HFLAPARQ+LLLSVLS+WADL+T T YRQGMHE LYGMKWARLMFGREFRVEGVL LWDHIFASS +EG+PD+PECIE VAVAMV+S+R +LLAED TGCLQLLMRYPPDQ VST I LS++L + R PS + S A E P WL GG+ G+G S R P + A E+ R GG FGR+ +E + +NNWQQGLDEFTRRA+SAAQ VAK AVQTVERTQ GG G P + L+RRLR CA +E G+T V AA++I+EVAR+LE R S R S +GVTR FSTYSEDDGCAD LYT+DL
Sbjct: 130 RKEMTDTIKADLERLFPTGCGDHFLAPARQELLLSVLSVWADLNTGTAYRQGMHEVLAPLILVLEKEVAAATRAEAIAGDSTXXXXXXXXXXXXXXXXXXXXXXXXXXVKASPWVGKSIVNGEPLNAGTHPAFAAILGHGSTPEDLEADAFWLFSAVMSGLERFYEHGEKATSTSALGAGRGGGEGGSVDSPVVEMCKRLQGVRMRAADPELQQHLSHLDISPQAGYLKLYGMKWARLMFGREFRVEGVLVLWDHIFASSWIEGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPPDQDVSTAISLSLSLAKGQSLAAFERSTEPSSFSAASSGRAAPSSSSEIQQEPAPVWLNRGGR-----GHGIISGRSPSATGRAGH-------APSEWRRDDGGGXXVXXXXXXGRARAFGRDERLETER-EAKNNWQQGLDEFTRRAMSAAQGVAKLAVQTVERTQGGGDPRHLRTAGGVPASEALSLSRRLRTACAKLETGETPVSLAAQEIKEVARILEARSGAPSVREPLRSTNSMGSGGGG-----------------------QGVTRAFSTYSEDDGCADALYTQDL 690
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A444TDY5_ARMVU (TBC1 domain family member 5 n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444TDY5_ARMVU) HSP 1 Score: 87.0 bits (214), Expect = 5.040e-14 Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = 1 Query: 166 ELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGG------YRHAPPSMY-LGGLSDTAEDDHLRAGS 528
++YG++W RLMFGREF +L +WD IFA S IE + VAM+ ++D+LL D T CL LLMRYPP V ++I ++ +P G Y++ P S+ +GG + R GS
Sbjct: 406 QVYGIRWVRLMFGREFSFTDLLMVWDAIFADSYSNFL-----LIEYLMVAMLSYIKDQLLEADYTSCLSLLMRYPPSSDVQSIIQTALYFRKPDGSNIPRKYKNVPASLATVGGQQNIHRSPQTRHGS 528
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A1B6M3J3_9HEMI (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6M3J3_9HEMI) HSP 1 Score: 80.1 bits (196), Expect = 5.770e-14 Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 1 Query: 67 EHFLAPARQQLLLSVLSLWADLHTDTGYRQGMHELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGY 453
EH LAP L +LH L+G++W RL+FGREF ++ +L +WD IFA EG + + + V +AM++++R +LL D TGCL +LM+YP VS +ID ++ L P Y
Sbjct: 1 EHLLAP-----------LDPELHQHLQQMNVTLPLFGIRWLRLLFGREFPLQDLLVMWDAIFA----EG--SMFQLVNYVVIAMLMAIRRQLLISDHTGCLTILMKYPA-MDVSKIIDRALFLKNPQTY 111
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A5N5TGS9_9CRUS (TBC1 domain family member 5 n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5TGS9_9CRUS) HSP 1 Score: 87.0 bits (214), Expect = 6.300e-14 Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = 1 Query: 166 ELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGG------YRHAPPSMY-LGGLSDTAEDDHLRAGS 528
++YG++W RLMFGREF +L +WD IFA S IE + VAM+ ++D+LL D T CL LLMRYPP V ++I ++ +P G Y++ P S+ +GG + R GS
Sbjct: 358 QVYGIRWVRLMFGREFSFTDLLMVWDAIFADSYSNFL-----LIEYLMVAMLSYIKDQLLEADYTSCLSLLMRYPPSSDVQSIIQTALYFRKPDGSNIPRKYKNVPASLATVGGQQNIHRSPQTRHGS 480
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A2Z6QHF3_9GLOM (Rab-GAP TBC domain-containing protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QHF3_9GLOM) HSP 1 Score: 87.0 bits (214), Expect = 7.550e-14 Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 1 Query: 127 DLHTDTGYRQGMHELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIAL 435
+LH + +LYG++W RL+FGREF ++ VL LWD IFA P L ++ V VAM+L +RD+LL D TGCL +LMRYPP +I +I L
Sbjct: 279 ELHERLNELEIEPQLYGIRWIRLLFGREFPLDKVLTLWDGIFAED-----PTL-RIVDHVCVAMMLLIRDDLLKSDYTGCLSMLMRYPPTSDTGVLIKQAIYL 375
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A812ASD9_SEPPH (TBC1D5 n=6 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812ASD9_SEPPH) HSP 1 Score: 86.7 bits (213), Expect = 1.170e-13 Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1 Query: 124 ADLHTDTGYRQGMHELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGYRHAPPSMY 477
A+LH + + ++YG++W RL+FGREF ++ +L LWD IFA + G + ++ V V M+L +RD LL D C+ LMRYPP V +D ++ L +P Y PP Y
Sbjct: 783 AELHLHLERLEIVPQIYGIRWVRLLFGREFPMQDLLMLWDAIFADGI--GF----DLVDYVFVGMLLYIRDLLLTSDYPNCMNTLMRYPPVGDVHYFVDKALYLREPNQYPRPPPYSY 894
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A8H6A922_ASPBU (Rab-GAP TBC domain-containing protein n=3 Tax=Aspergillus TaxID=5052 RepID=A0A8H6A922_ASPBU) HSP 1 Score: 85.5 bits (210), Expect = 1.580e-13 Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 1 Query: 7 KEMTDTIKADLERLYPTGCGEHFLAPARQQLLLSVLSLWADLHTDTGYRQGMH------------ELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYP---PDQSVSTVID 420
++M I D++R F PA + + VL ++A L+ D GYRQ + +++ +W RL+FGREF E VL LWD +F+ L PE ++ V VAM+L +R +LLA DS+ L +L+RYP P + S V+D
Sbjct: 110 EQMRADISQDVDRCLQENF--FFREPATKAKMTDVLFIYAKLNPDLGYRQDLELADHLQAQEILPQIFLTRWMRLLFGREFPFEDVLILWDFLFSEGLR------PELVDYVCVAMLLRIRWQLLAADSSTVLTMLLRYPSPHPHEPYSFVLD 254
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A8D9DY72_9HEMI (TBC1 domain family member 5 n=4 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9DY72_9HEMI) HSP 1 Score: 85.5 bits (210), Expect = 1.790e-13 Identity = 49/135 (36.30%), Postives = 73/135 (54.07%), Query Frame = 1 Query: 67 EHFLAPARQQLLLSVLSLWADLHTDTGYRQGMHELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGYRHAPPS 471
EH L PA L + +L L L+G++W RL+FGREF ++ +L LWD IFA S E + V VAM++++RD++++ D CL LMRYPP V+++I+ ++ L P Y PS
Sbjct: 313 EHILKPADPALHAQLYNLKIPL-----------TLFGIRWLRLLFGREFSLQDLLVLWDVIFAESF--------ELVNYVVVAMLVAIRDQVISSDHIECLSYLMRYPPGIDVNSIIEHALHLKYPNLYPEYEPS 428
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A4V5ZYV7_STECR (Rab-GAP TBC domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4V5ZYV7_STECR) HSP 1 Score: 81.6 bits (200), Expect = 2.050e-13 Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = 1 Query: 166 ELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGYRHAPPSM 474
++YG++W RL+FGREF + +L LWD IFA +P L ++ + +AM+L +RD LLA D + CLQ LMRYPP V + I L++ L P + P +
Sbjct: 106 QIYGIRWLRLLFGREFPMPDLLCLWDAIFAD-----KPTLV-LVDFIFIAMLLQIRDLLLAGDYSMCLQYLMRYPPTVDVHSFIQLALYLKSPKKFARPPAGV 202 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9979.24096.1 >prot_P-canaliculata_contig9979.24096.1 ID=prot_P-canaliculata_contig9979.24096.1|Name=mRNA_P-canaliculata_contig9979.24096.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=391bp MTDTIKADLERLYPTGCGEHFLAPARQQLLLSVLSLWADLHTDTGYRQGMback to top mRNA from alignment at P-canaliculata_contig9979:6387..10767- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9979.24096.1 ID=mRNA_P-canaliculata_contig9979.24096.1|Name=mRNA_P-canaliculata_contig9979.24096.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4381bp|location=Sequence derived from alignment at P-canaliculata_contig9979:6387..10767- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9979:6387..10767- >mRNA_P-canaliculata_contig9979.24096.1 ID=mRNA_P-canaliculata_contig9979.24096.1|Name=mRNA_P-canaliculata_contig9979.24096.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2346bp|location=Sequence derived from alignment at P-canaliculata_contig9979:6387..10767- (Pelvetia canaliculata dioecious)back to top |