mRNA_P-canaliculata_contig9979.24096.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-canaliculata_contig9979.24096.1
Unique Name	mRNA_P-canaliculata_contig9979.24096.1
Type	mRNA
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))

Homology

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BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: D7FWI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI0_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 3.650e-110
Identity = 220/422 (52.13%), Postives = 254/422 (60.19%), Query Frame = 1

Query:    4 RKEMTDTIKADLERLYPTGCGEHFLAPARQQLLLSVLSLWADLHTDTGYRQGMHELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGY----RHAPPSMYLGGLSDTAEDDHLRAGSSESGPAWLMDGGKTGGESGNGFSRRIPRSNSNHSREQQQRLRAEEEYGRGLGGA-------------GFGREGGIEARGGDMRNNWQQGLDEFTRRALSAAQDVAKRAVQTVERTQHGG--------GSAPGA----LARRLREVCAAMEAGKTSVHAAAEDIREVARLLEGRKEFNSGRRSSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVTRGFSTYSEDDGCADGLYTRDL 1182
            RKEMTDTIKADLERL+PTGCG+HFLAPARQ+LLLSVLS+WADL+T+T YRQ    LYGMKWARLMFGREFRVEGVL LWDHIFASS +EG+PD+PECIE VAVAMV+S+R +LLAED TGCLQLLMRYPPDQ VST I LS++L +        R   PS +    S  A          E  P WL  GG+  G      S R P +  +          A  E+ R  GG               FGR+  +E    + +NNWQQGLDEFTRRA+SAAQ VAK AVQTVERTQ GG        G  P +    L+RRLR  CA ME G+  V  AA++I+EVAR+LE R    S R    S                                 +GVTR FSTYSEDDGCAD LYT+DL
Sbjct:   90 RKEMTDTIKADLERLFPTGCGDHFLAPARQELLLSVLSVWADLNTETAYRQ----LYGMKWARLMFGREFRVEGVLVLWDHIFASSWIEGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPPDQGVSTAISLSLSLAKGQSLAAFERSTEPSSFAAASSGRAAPSSSSEIQQEPAPVWLNRGGRDHGS----VSGRSPSATGSAGH-------APSEWRRDDGGGXXVXXXXXXGRARAFGRDERLETER-EAKNNWQQGLDEFTRRAMSAAQGVAKLAVQTVERTQGGGDPRHLRTAGGVPASEALSLSRRLRTACAKMETGEAPVSLAAQEIKEVARILEARSGAPSVREPLRSTNSMGGGGGG-----------------------QGVTRAFSTYSEDDGCADALYTQDL 472

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BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A6H5KGW7_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW7_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 2.440e-85
Identity = 225/597 (37.69%), Postives = 259/597 (43.38%), Query Frame = 1

Query:    4 RKEMTDTIKADLERLYPTGCGEHFLAPARQQLLLSVLSLWADLHTDTGYRQGMHE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGY----RHAPPSMYLGGLSDTAEDDHLRAGSSESGPAWLMDGGKTGGESGNGF-SRRIPRSNSNHSREQQQRLRAEEEYGRGLGGA-------------GFGREGGIEARGGDMRNNWQQGLDEFTRRALSAAQDVAKRAVQTVERTQHGG--------GSAPGA----LARRLREVCAAMEAGKTSVHAAAEDIREVARLLEGRKEFNSGRRSSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVTRGFSTYSEDDGCADGLYTRDL 1182
            RKEMTDTIKADLERL+PTGCG+HFLAPARQ+LLLSVLS+WADL+T T YRQGMHE                                                                                                                                                                              LYGMKWARLMFGREFRVEGVL LWDHIFASS +EG+PD+PECIE VAVAMV+S+R +LLAED TGCLQLLMRYPPDQ VST I LS++L +        R   PS +    S  A          E  P WL  GG+     G+G  S R P +             A  E+ R  GG               FGR+  +E    + +NNWQQGLDEFTRRA+SAAQ VAK AVQTVERTQ GG        G  P +    L+RRLR  CA +E G+T V  AA++I+EVAR+LE R    S R    S                                 +GVTR FSTYSEDDGCAD LYT+DL
Sbjct:  130 RKEMTDTIKADLERLFPTGCGDHFLAPARQELLLSVLSVWADLNTGTAYRQGMHEVLAPLILVLEKEVAAATRAEAIAGDSTXXXXXXXXXXXXXXXXXXXXXXXXXXVKASPWVGKSIVNGEPLNAGTHPAFAAILGHGSTPEDLEADAFWLFSAVMSGLERFYEHGEKATSTSALGAGRGGGEGGSVDSPVVEMCKRLQGVRMRAADPELQQHLSHLDISPQAGYLKLYGMKWARLMFGREFRVEGVLVLWDHIFASSWIEGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPPDQDVSTAISLSLSLAKGQSLAAFERSTEPSSFSAASSGRAAPSSSSEIQQEPAPVWLNRGGR-----GHGIISGRSPSATGRAGH-------APSEWRRDDGGGXXVXXXXXXGRARAFGRDERLETER-EAKNNWQQGLDEFTRRAMSAAQGVAKLAVQTVERTQGGGDPRHLRTAGGVPASEALSLSRRLRTACAKLETGETPVSLAAQEIKEVARILEARSGAPSVREPLRSTNSMGSGGGG-----------------------QGVTRAFSTYSEDDGCADALYTQDL 690

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BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A444TDY5_ARMVU (TBC1 domain family member 5 n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444TDY5_ARMVU)

HSP 1 Score: 87.0 bits (214), Expect = 5.040e-14
Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = 1

Query:  166 ELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGG------YRHAPPSMY-LGGLSDTAEDDHLRAGS 528
            ++YG++W RLMFGREF    +L +WD IFA S           IE + VAM+  ++D+LL  D T CL LLMRYPP   V ++I  ++   +P G      Y++ P S+  +GG  +       R GS
Sbjct:  406 QVYGIRWVRLMFGREFSFTDLLMVWDAIFADSYSNFL-----LIEYLMVAMLSYIKDQLLEADYTSCLSLLMRYPPSSDVQSIIQTALYFRKPDGSNIPRKYKNVPASLATVGGQQNIHRSPQTRHGS 528

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BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A1B6M3J3_9HEMI (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6M3J3_9HEMI)

HSP 1 Score: 80.1 bits (196), Expect = 5.770e-14
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 1

Query:   67 EHFLAPARQQLLLSVLSLWADLHTDTGYRQGMHELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGY 453
            EH LAP           L  +LH           L+G++W RL+FGREF ++ +L +WD IFA    EG   + + +  V +AM++++R +LL  D TGCL +LM+YP    VS +ID ++ L  P  Y
Sbjct:    1 EHLLAP-----------LDPELHQHLQQMNVTLPLFGIRWLRLLFGREFPLQDLLVMWDAIFA----EG--SMFQLVNYVVIAMLMAIRRQLLISDHTGCLTILMKYPA-MDVSKIIDRALFLKNPQTY 111

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BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A5N5TGS9_9CRUS (TBC1 domain family member 5 n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5TGS9_9CRUS)

HSP 1 Score: 87.0 bits (214), Expect = 6.300e-14
Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = 1

Query:  166 ELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGG------YRHAPPSMY-LGGLSDTAEDDHLRAGS 528
            ++YG++W RLMFGREF    +L +WD IFA S           IE + VAM+  ++D+LL  D T CL LLMRYPP   V ++I  ++   +P G      Y++ P S+  +GG  +       R GS
Sbjct:  358 QVYGIRWVRLMFGREFSFTDLLMVWDAIFADSYSNFL-----LIEYLMVAMLSYIKDQLLEADYTSCLSLLMRYPPSSDVQSIIQTALYFRKPDGSNIPRKYKNVPASLATVGGQQNIHRSPQTRHGS 480

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BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A2Z6QHF3_9GLOM (Rab-GAP TBC domain-containing protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QHF3_9GLOM)

HSP 1 Score: 87.0 bits (214), Expect = 7.550e-14
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 1

Query:  127 DLHTDTGYRQGMHELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIAL 435
            +LH      +   +LYG++W RL+FGREF ++ VL LWD IFA       P L   ++ V VAM+L +RD+LL  D TGCL +LMRYPP      +I  +I L
Sbjct:  279 ELHERLNELEIEPQLYGIRWIRLLFGREFPLDKVLTLWDGIFAED-----PTL-RIVDHVCVAMMLLIRDDLLKSDYTGCLSMLMRYPPTSDTGVLIKQAIYL 375

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BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A812ASD9_SEPPH (TBC1D5 n=6 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812ASD9_SEPPH)

HSP 1 Score: 86.7 bits (213), Expect = 1.170e-13
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1

Query:  124 ADLHTDTGYRQGMHELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGYRHAPPSMY 477
            A+LH      + + ++YG++W RL+FGREF ++ +L LWD IFA  +  G     + ++ V V M+L +RD LL  D   C+  LMRYPP   V   +D ++ L +P  Y   PP  Y
Sbjct:  783 AELHLHLERLEIVPQIYGIRWVRLLFGREFPMQDLLMLWDAIFADGI--GF----DLVDYVFVGMLLYIRDLLLTSDYPNCMNTLMRYPPVGDVHYFVDKALYLREPNQYPRPPPYSY 894

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BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A8H6A922_ASPBU (Rab-GAP TBC domain-containing protein n=3 Tax=Aspergillus TaxID=5052 RepID=A0A8H6A922_ASPBU)

HSP 1 Score: 85.5 bits (210), Expect = 1.580e-13
Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 1

Query:    7 KEMTDTIKADLERLYPTGCGEHFLAPARQQLLLSVLSLWADLHTDTGYRQGMH------------ELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYP---PDQSVSTVID 420
            ++M   I  D++R         F  PA +  +  VL ++A L+ D GYRQ +             +++  +W RL+FGREF  E VL LWD +F+  L       PE ++ V VAM+L +R +LLA DS+  L +L+RYP   P +  S V+D
Sbjct:  110 EQMRADISQDVDRCLQENF--FFREPATKAKMTDVLFIYAKLNPDLGYRQDLELADHLQAQEILPQIFLTRWMRLLFGREFPFEDVLILWDFLFSEGLR------PELVDYVCVAMLLRIRWQLLAADSSTVLTMLLRYPSPHPHEPYSFVLD 254

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BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A8D9DY72_9HEMI (TBC1 domain family member 5 n=4 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9DY72_9HEMI)

HSP 1 Score: 85.5 bits (210), Expect = 1.790e-13
Identity = 49/135 (36.30%), Postives = 73/135 (54.07%), Query Frame = 1

Query:   67 EHFLAPARQQLLLSVLSLWADLHTDTGYRQGMHELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGYRHAPPS 471
            EH L PA   L   + +L   L            L+G++W RL+FGREF ++ +L LWD IFA S         E +  V VAM++++RD++++ D   CL  LMRYPP   V+++I+ ++ L  P  Y    PS
Sbjct:  313 EHILKPADPALHAQLYNLKIPL-----------TLFGIRWLRLLFGREFSLQDLLVLWDVIFAESF--------ELVNYVVVAMLVAIRDQVISSDHIECLSYLMRYPPGIDVNSIIEHALHLKYPNLYPEYEPS 428

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BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A4V5ZYV7_STECR (Rab-GAP TBC domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4V5ZYV7_STECR)

HSP 1 Score: 81.6 bits (200), Expect = 2.050e-13
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = 1

Query:  166 ELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGYRHAPPSM 474
            ++YG++W RL+FGREF +  +L LWD IFA      +P L   ++ + +AM+L +RD LLA D + CLQ LMRYPP   V + I L++ L  P  +   P  +
Sbjct:  106 QIYGIRWLRLLFGREFPMPDLLCLWDAIFAD-----KPTLV-LVDFIFIAMLLQIRDLLLAGDYSMCLQYLMRYPPTVDVHSFIQLALYLKSPKKFARPPAGV 202

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
D7FWI0_ECTSI	3.650e-110	52.13	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KGW7_9PHAE	2.440e-85	37.69	Rab-GAP TBC domain-containing protein n=1 Tax=Ecto...	[more]
A0A444TDY5_ARMVU	5.040e-14	38.28	TBC1 domain family member 5 n=1 Tax=Armadillidium ...	[more]
A0A1B6M3J3_9HEMI	5.770e-14	37.21	Rab-GAP TBC domain-containing protein (Fragment) n...	[more]
A0A5N5TGS9_9CRUS	6.300e-14	38.28	TBC1 domain family member 5 n=1 Tax=Armadillidium ...	[more]
A0A2Z6QHF3_9GLOM	7.550e-14	44.66	Rab-GAP TBC domain-containing protein n=2 Tax=Rhiz...	[more]
A0A812ASD9_SEPPH	1.170e-13	38.14	TBC1D5 n=6 Tax=Sepia pharaonis TaxID=158019 RepID=...	[more]
A0A8H6A922_ASPBU	1.580e-13	35.29	Rab-GAP TBC domain-containing protein n=3 Tax=Aspe...	[more]
A0A8D9DY72_9HEMI	1.790e-13	36.30	TBC1 domain family member 5 n=4 Tax=Cacopsylla mel...	[more]
A0A4V5ZYV7_STECR	2.050e-13	41.75	Rab-GAP TBC domain-containing protein n=1 Tax=Stei...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	355.1
Seed ortholog evalue	4.1e-95
Seed eggNOG ortholog	2880.D7FWI0
Preferred name	TBC1D5
KEGG rclass	RC00002,RC00078
KEGG ko	ko:K01765,ko:K03843,ko:K18081,ko:K18469
KEGG Reaction	R03428,R03429,R05973,R06238
KEGG Pathway	ko00510,ko00513,ko00562,ko01100,ko04070,map00510,map00513,map00562,map01100,map04070
KEGG Module	M00055,M00132
GOs	GO:0002090,GO:0002092,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005776,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006914,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0007193,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009410,GO:0009605,GO:0009893,GO:0009987,GO:0009991,GO:0010008,GO:0010033,GO:0010243,GO:0010604,GO:0012505,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016236,GO:0016482,GO:0017016,GO:0017137,GO:0019222,GO:0019899,GO:0023052,GO:0030100,GO:0030234,GO:0030695,GO:0030904,GO:0031000,GO:0031090,GO:0031156,GO:0031267,GO:0031323,GO:0031325,GO:0031338,GO:0031410,GO:0031667,GO:0031982,GO:0031984,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035612,GO:0036270,GO:0042147,GO:0042221,GO:0042493,GO:0042594,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043279,GO:0043547,GO:0043900,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045807,GO:0046907,GO:0048259,GO:0048260,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060589,GO:0060627,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0090630,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098796,GO:0098805,GO:1901698,GO:1903664,GO:1903665,GO:1905394
EggNOG free text desc.	regulation of vesicle fusion
EggNOG OGs	COG5210@1,KOG1091@2759
Ec32 ortholog description	Rab-GTPase-TBC domain
Ec32 ortholog	Ec-26_006540.1
EC	2.4.1.132,2.4.1.257,2.7.1.159,3.1.3.64,3.1.3.95
COG Functional cat.	H
CAZy	GT4
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003,ko01009,ko04131
Hectar predicted targeting category	other localisation
Exons	5
Model size	2330
Cds size	1173
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817357.138051-UTR-P-canaliculata_contig9979:6386..7531	1622817357.138051-UTR-P-canaliculata_contig9979:6386..7531	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig9979 6387..7531 -
1693495244.7542768-UTR-P-canaliculata_contig9979:6386..7531	1693495244.7542768-UTR-P-canaliculata_contig9979:6386..7531	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig9979 6387..7531 -
1622817357.236456-UTR-P-canaliculata_contig9979:10755..10767	1622817357.236456-UTR-P-canaliculata_contig9979:10755..10767	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig9979 10756..10767 -
1693495244.8200035-UTR-P-canaliculata_contig9979:10755..10767	1693495244.8200035-UTR-P-canaliculata_contig9979:10755..10767	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig9979 10756..10767 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817357.1525204-CDS-P-canaliculata_contig9979:7531..7813	1622817357.1525204-CDS-P-canaliculata_contig9979:7531..7813	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9979 7532..7813 -
1693495244.7659237-CDS-P-canaliculata_contig9979:7531..7813	1693495244.7659237-CDS-P-canaliculata_contig9979:7531..7813	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9979 7532..7813 -
1622817357.1661797-CDS-P-canaliculata_contig9979:8119..8246	1622817357.1661797-CDS-P-canaliculata_contig9979:8119..8246	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9979 8120..8246 -
1693495244.7757323-CDS-P-canaliculata_contig9979:8119..8246	1693495244.7757323-CDS-P-canaliculata_contig9979:8119..8246	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9979 8120..8246 -
1622817357.18288-CDS-P-canaliculata_contig9979:8718..9176	1622817357.18288-CDS-P-canaliculata_contig9979:8718..9176	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9979 8719..9176 -
1693495244.7860787-CDS-P-canaliculata_contig9979:8718..9176	1693495244.7860787-CDS-P-canaliculata_contig9979:8718..9176	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9979 8719..9176 -
1622817357.1999059-CDS-P-canaliculata_contig9979:9579..9729	1622817357.1999059-CDS-P-canaliculata_contig9979:9579..9729	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9979 9580..9729 -
1693495244.7987695-CDS-P-canaliculata_contig9979:9579..9729	1693495244.7987695-CDS-P-canaliculata_contig9979:9579..9729	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9979 9580..9729 -
1622817357.218225-CDS-P-canaliculata_contig9979:10599..10755	1622817357.218225-CDS-P-canaliculata_contig9979:10599..10755	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9979 10600..10755 -
1693495244.8092785-CDS-P-canaliculata_contig9979:10599..10755	1693495244.8092785-CDS-P-canaliculata_contig9979:10599..10755	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig9979 10600..10755 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig9979.24096.1	prot_P-canaliculata_contig9979.24096.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig9979 7532..10755 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig9979:6387..10767-
coding sequence from alignment at P-canaliculata_contig9979:6387..10767-

protein sequence of mRNA_P-canaliculata_contig9979.24096.1

>prot_P-canaliculata_contig9979.24096.1 ID=prot_P-canaliculata_contig9979.24096.1|Name=mRNA_P-canaliculata_contig9979.24096.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=391bp
MTDTIKADLERLYPTGCGEHFLAPARQQLLLSVLSLWADLHTDTGYRQGM
HELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAV
AMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGYRHA
PPSMYLGGLSDTAEDDHLRAGSSESGPAWLMDGGKTGGESGNGFSRRIPR
SNSNHSREQQQRLRAEEEYGRGLGGAGFGREGGIEARGGDMRNNWQQGLD
EFTRRALSAAQDVAKRAVQTVERTQHGGGSAPGALARRLREVCAAMEAGK
TSVHAAAEDIREVARLLEGRKEFNSGRRSSASASASGRGNGSSSGNSSSG
NSSNRSLMGGGGGGGRGVTRGFSTYSEDDGCADGLYTRDL*

mRNA from alignment at P-canaliculata_contig9979:6387..10767-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig9979.24096.1 ID=mRNA_P-canaliculata_contig9979.24096.1|Name=mRNA_P-canaliculata_contig9979.24096.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4381bp|location=Sequence derived from alignment at P-canaliculata_contig9979:6387..10767- (Pelvetia canaliculata dioecious)
AAGCGCAAGGAAATGACGGACACGATCAAGGCCGACCTGGAAAGGTTGTA
CCCGACGGGCTGCGGGGAGCACTTCCTCGCTCCTGCCAGGCAGCAGCTAT
TGCTGAGCGTGCTGTCCCTCTGGGCGGACCTGCATACGGACACGGGGTAT
CGCCAGGGGATGCACGAAGTGCTGGCCCCGCTGGTTCTGGCGCTAGAGAA
AGAAGTCGCCGCTGCCACGCGCGTCGCGGCAGACGCGGACTCGGCCGCTG
ACGGAAGCGGCGCAACCACGGCGCCATCGCGATGGATCGGGACGGCGAAG
GTTGACGGAAACTTTATGGAGGCGTCCGCGCACGCCGGTATCGGGGCCAC
GCTCGGCGACGGCTCTTCCTCGGAAGACCTCGAAGCGGACGCCTTCTGGC
TGTTCAGCGCCGTCATGACCGGTCTGGAAGGTTTTTATGAGCACGGAGGC
GTGCGGTCGGATCGGCGGCGGTCCGGAGGCGGCGACCCAGGCGGCGAGCG
CGGGCTAGATTCGCCCGTCGTCGAGATGTGCAAGAGGCTCCAGGGGAAGC
GCATGCGGGAGGCTGACCCCGAGCTGCAGAAACACCTTGCAGATCTCGAT
ATAAGCCCACAGGTGAGTGTTGAGTCGGGGATCGGACAAGGGTGATCATA
TTTGCGCTGCTGCCGTACCCCATGATATTTCGATTGCTTTGTCTAGCCTA
AACTTCACGCGCGTCTGTCGGTGTCCTGTGTCTGGTGCAACAGCCATTCC
GCATGACACGCATTCAAGCGCCTCATCTGCTCATCTGATCTGGATGTTAA
AATACTGTACCGTAAACATTTATTTATTTGTATTAGCGCGAGAGATCGGT
TCACCCGATTTGCCTCTTCGCATGACACGCACGCAAGCCTCATACACGGA
CGCAAGCGCTTCATTTGATCTGGATGTTAAAATATTGCACCATAAACATC
CTTTGTTTTTTAGTTAGCTCGAGAGATCGGTTCACCCAATCTGTCTGTTC
GTTTTGAATGCAAAAAATATGCCTGGTGTGCAATGTAGCTCTATGGAATG
AAGTGGGCGCGGCTGATGTTCGGCCGAGAATTCCGTGTGGAGGGGGTGCT
GCAGCTGTGGGATCACATCTTCGCGTCGTCCTTGCTCGAAGGCCGGCCAG
ACCTGCCGGAGTGCATTGAAGAGGTCGCCGTCGCCATGGTGCGTGTTTTG
TCGGAATCCCCCTGTAGGAGGCGTGTTTTGTTGGAGTTACACTGGAAGGC
TACTGATCCTTCTCCTGCTGCAGCATCCACTGCTGCTGCCACTGCGTCAA
TCGTCAAACGAGGTTCACTTCTGTTCTGATATAGTCGCAAAGGCAATCAT
TCGCGATGTACAAAGGGTACCAGATACTTCAAGCATAACAAGCGCGTTTG
CGGTCTGTGCGGACACACGCGCGTGGTACAACAAACGCGTTTCTGGTCGG
TTCGGGCACACGTGCGTGGTCGTCCAGTACAATTAGGTAAAACCACCTTA
CACTGGCGTGGGAAAACGCAAAGCTTTCCAGCCTAAGGCATCCTCCCTAC
CCTTCCAAACACTCCGCGGTCAATGCGAAACCCTGTGGCAGGTTCTGTCG
GTGCGCGATGAGCTTCTCGCCGAGGATTCGACGGGCTGCCTGCAGCTTCT
CATGCGCTACCCGCCAGACCAGAGCGTGTCCACCGTCATCGACCTCTCCA
TTGCTCTAGGACAACCTGGAGGCTACAGGCACGCCCCGCCTTCGATGTAT
CTCGGCGGTCTCTCAGACACTGCGGAGGACGATCATCTCCGGGCGGGATC
GTCAGAGTCCGGACCCGCGTGGTTAATGGACGGCGGTAAGACGGGCGGGG
AATCAGGCAACGGTTTTTCTCGACGTATTCCTAGGAGCAACTCGAACCAC
AGCCGGGAACAACAGCAGCGACTCAGGGCTGAGGAGGAGTACGGGCGGGG
TCTCGGCGGCGCGGGTTTCGGGAGAGAAGGTGGCATAGAGGCGAGGGGAG
GAGACATGAGGAACAACTGGCAGCAAGGGCTGGACGAGTTCACCCGCAGG
TACAGGCAGTGCTTCCCCCTCTATCGAAGACACACTGCTGGCCTGTTCTA
TTGAAGATAGTTTTGTAAGGCTGACCTGTTCTGGGTAGAGATCGACGTGA
CTGCCTTGACCATGGGATTATCGTAGAGAGAATTGCTACTGCCGGTATTG
TTGTCGTCGTGGCTGTCAAGAACCCGCCCCTGTCCCCTGTCCCCTATCCC
CTCTCCCCCTTATTTGTTACAACAACTTTAGGAAGTGTTAAATGTTTCCT
AATATTGTACTTCAGGGAGGGGGAAACCATCATCAACTGACTCGTTCTCT
CGACCTTTCTAGAATTCCAGCACCATTTCGGTGGCGGGCCGTGATACGCA
GACCCACGCTATAGGTTGAAGCTTGATGCTAACTGATGAGTGTTACCAAC
ATCTCCAACCCACCGTGCGCTGCGTCGACATCATACTTTTATGCATTAAC
CTGCCCGTATGCACCGCACAGGGCATTGTCCGCCGCCCAGGACGTTGCTA
AGAGGGCGGTACAGACTGTGGAGCGTACTCAGCACGGGGGGGGGTCGGCA
CCAGGGGCGCTGGCACGAAGGCTTCGGGAAGTGTGCGCCGCGATGGAGGT
ACGGAGGTGAAGTTTGGGAAATCGTGGGGCGAAACGCTGGTTATGGTGCT
GAAGGATTCGTTCACAGACGGAGTATGTTGCTCTCTATCACATTTTTTCG
ATACTGGATCCCTGTAATTTTCAAGCCGGTAATGCGAACGCAATATTTTC
TCTGCCACTTGTACCGTAACGCTCCAATTATTGTAGGTTGTGTATCGTGT
CTTGTTGCACCGATGTAGTACACTGCGTGCTGAACCGATAGTACATTGTG
TCCTTTTGTCCTTTTGTTGACTGTGCTACGACTCTCGCTCTCTTGCTACC
ACAGGCCGGGAAGACGTCGGTGCACGCGGCCGCTGAGGACATCAGAGAGG
TGGCGCGGTTACTCGAGGGGCGGAAGGAGTTCAACTCGGGAAGGCGGTCG
TCGGCCAGTGCGAGTGCGAGCGGTCGCGGTAACGGTAGCAGTAGCGGTAA
CAGCAGTAGCGGTAACAGTAGCAATCGCAGTCTCATGGGGGGCGGGGGCG
GCGGCGGCAGGGGCGTGACGCGAGGGTTCTCGACCTACTCAGAGGACGAT
GGTTGCGCGGACGGCCTTTACACTCGAGACTTGTGAAGAATCGTCATAAG
GCTTCTTTTTTTTTGGGAGGGTTTGAAATAAAAATCGCGACTCAAACCAG
TTTGTTTTACTGCCGTGTTTGTTGTTTCACGTTCTGACCAAACCGGGACG
GGGAGCCAGTGGGCCAATTAGAGCTATCTCCCGCGGTAAACACAGGGCTG
TGTTTGGTGTTCTCGCTCCTCGTTCCTGTGAATTTTTGGCTTTGACCGTT
TCAAGCCCATGCAAAAATGAGGTCGTCGGGATAAAAGTCGTCGGAAACGG
TAGGAATAATCACATACACGATGATGATAGCACGCTTAAGACTGCGTGTA
GCGGATAGCTTTGGAATAGAGCTCTCTGATTGGTTCCAGCACAGCCCCAG
TTAGGTCGGCGTTTGGCTCCAAAAGCAGGCAGACACAGGGTGTTGAAAAA
CATTAATTTCCGGTCAACAGATGTAGATGGTCGAATAAGGTTATAAAGAT
GTGCAGGGAAATCACACGATTCTAGCGGCGGTGGGCACGGGGACGGCAAC
GGCGATCATGGCTGACTTTCCTTTGCCTCTTTGGTTCCGGGGGGAAAATA
AGTGCTCTGTGGCGTACGTAACGCACGGATGATGCGGGGGCACGCTCTCG
CGGTGGAGAATCAAGTTACTGCAATGGTAATCACCAGGCAGTTTTCGAGA
ACAAACCTCGTTGCTGTAGCTTTCTGTCGTTTGAACGCGGCAGCGGCTCA
CTGTAGGTGCAGCGCGTTGGCGGGGTTCGAGGCCCTCATCTTGCAGCTTT
GCGCCTGAGCCGATCAAGGCTGTAAACGTCGGTTGTTGATTGACTGGCAG
TGCTGCGATACTACGCTTGTTCCCGAGTACCCTGGTAGCGCGCCTGGTGG
CATTTTGCTCTCTCGTGGTTTAACATCACGGAGCTTGTGAGTTCAATACT
TGTCGGCATTGTTATTTTTTGGGCCGCCCGCGCGGGGAAGCGCGAACTAG
CAGGGATCAACCGCGGGGTGACGTTGTATAGGATTAGGAAACTTGAATCT
ATCTGCGAGATGACGAAAGCTTAGGCGTGGATCGGGACAGGATGGTCTAT
CCTTGGCGATGGCAGGGGGGATAAGCACCGATGTAGTAGGTCCCATTGAC
ATAAAAGTGGTGGAACGGTTAGATAACGAAT

Coding sequence (CDS) from alignment at P-canaliculata_contig9979:6387..10767-

>mRNA_P-canaliculata_contig9979.24096.1 ID=mRNA_P-canaliculata_contig9979.24096.1|Name=mRNA_P-canaliculata_contig9979.24096.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2346bp|location=Sequence derived from alignment at P-canaliculata_contig9979:6387..10767- (Pelvetia canaliculata dioecious)
ATGACGGACACGATCAAGGCCGACCTGGAAAGGTTGTACCCGACGGGCTG
CGGGGAGCACTTCCTCGCTCCTGCCAGGCAGCAGCTATTGCTGAGCGTGC
TGTCCCTCTGGGCGGACCTGCATACGGACACGGGGTATCGCCAGGGGATG
CACGAAATGACGGACACGATCAAGGCCGACCTGGAAAGGTTGTACCCGAC
GGGCTGCGGGGAGCACTTCCTCGCTCCTGCCAGGCAGCAGCTATTGCTGA
GCGTGCTGTCCCTCTGGGCGGACCTGCATACGGACACGGGGTATCGCCAG
GGGATGCACGAACTCTATGGAATGAAGTGGGCGCGGCTGATGTTCGGCCG
AGAATTCCGTGTGGAGGGGGTGCTGCAGCTGTGGGATCACATCTTCGCGT
CGTCCTTGCTCGAAGGCCGGCCAGACCTGCCGGAGTGCATTGAAGAGGTC
GCCGTCGCCATGCTCTATGGAATGAAGTGGGCGCGGCTGATGTTCGGCCG
AGAATTCCGTGTGGAGGGGGTGCTGCAGCTGTGGGATCACATCTTCGCGT
CGTCCTTGCTCGAAGGCCGGCCAGACCTGCCGGAGTGCATTGAAGAGGTC
GCCGTCGCCATGGTTCTGTCGGTGCGCGATGAGCTTCTCGCCGAGGATTC
GACGGGCTGCCTGCAGCTTCTCATGCGCTACCCGCCAGACCAGAGCGTGT
CCACCGTCATCGACCTCTCCATTGCTCTAGGACAACCTGGAGGCTACAGG
CACGCCCCGCCTTCGATGTATCTCGGCGGTCTCTCAGACACTGCGGAGGA
CGATCATCTCCGGGCGGGATCGTCAGAGTCCGGACCCGCGTGGTTAATGG
ACGGCGGTAAGACGGGCGGGGAATCAGGCAACGGTTTTTCTCGACGTATT
CCTAGGAGCAACTCGAACCACAGCCGGGAACAACAGCAGCGACTCAGGGC
TGAGGAGGAGTACGGGCGGGGTCTCGGCGGCGCGGGTTTCGGGAGAGAAG
GTGGCATAGAGGCGAGGGGAGGAGACATGAGGAACAACTGGCAGCAAGGG
CTGGACGAGTTCACCCGCAGGTTCTGTCGGTGCGCGATGAGCTTCTCGCC
GAGGATTCGACGGGCTGCCTGCAGCTTCTCATGCGCTACCCGCCAGACCA
GAGCGTGTCCACCGTCATCGACCTCTCCATTGCTCTAGGACAACCTGGAG
GCTACAGGCACGCCCCGCCTTCGATGTATCTCGGCGGTCTCTCAGACACT
GCGGAGGACGATCATCTCCGGGCGGGATCGTCAGAGTCCGGACCCGCGTG
GTTAATGGACGGCGGTAAGACGGGCGGGGAATCAGGCAACGGTTTTTCTC
GACGTATTCCTAGGAGCAACTCGAACCACAGCCGGGAACAACAGCAGCGA
CTCAGGGCTGAGGAGGAGTACGGGCGGGGTCTCGGCGGCGCGGGTTTCGG
GAGAGAAGGTGGCATAGAGGCGAGGGGAGGAGACATGAGGAACAACTGGC
AGCAAGGGCTGGACGAGTTCACCCGCAGGGCATTGTCCGCCGCCCAGGAC
GTTGCTAAGAGGGCGGTACAGACTGTGGAGCGTACTCAGCACGGGGGGGG
GTCGGCACCAGGGGCGCTGGCACGAAGGCTTCGGGAAGTGTGCGCCGCGA
TGGAGGGCATTGTCCGCCGCCCAGGACGTTGCTAAGAGGGCGGTACAGAC
TGTGGAGCGTACTCAGCACGGGGGGGGGTCGGCACCAGGGGCGCTGGCAC
GAAGGCTTCGGGAAGTGTGCGCCGCGATGGAGGCCGGGAAGACGTCGGTG
CACGCGGCCGCTGAGGACATCAGAGAGGTGGCGCGGTTACTCGAGGGGCG
GAAGGAGTTCAACTCGGGAAGGCGGTCGTCGGCCAGTGCGAGTGCGAGCG
GTCGCGGTAACGGTAGCAGTAGCGGTAACAGCAGTAGCGGTAACAGTAGC
AATCGCAGTCTCATGGGGGGCGGGGGCGGCGGCGGCAGGGGCGTGACGCG
AGGGTTCTCGACCTACTCAGAGGACGATGGTTGCGCGGACGGCCTTTACA
CTCGAGACTTGTGAGCCGGGAAGACGTCGGTGCACGCGGCCGCTGAGGAC
ATCAGAGAGGTGGCGCGGTTACTCGAGGGGCGGAAGGAGTTCAACTCGGG
AAGGCGGTCGTCGGCCAGTGCGAGTGCGAGCGGTCGCGGTAACGGTAGCA
GTAGCGGTAACAGCAGTAGCGGTAACAGTAGCAATCGCAGTCTCATGGGG
GGCGGGGGCGGCGGCGGCAGGGGCGTGACGCGAGGGTTCTCGACCTACTC
AGAGGACGATGGTTGCGCGGACGGCCTTTACACTCGAGACTTGTGA