Homology
BLAST of mRNA_P-canaliculata_contig99775.24094.1 vs. uniprot
Match:
UPI001FAEB7E7 (cadherin repeat domain-containing protein n=1 Tax=Amphritea spongicola TaxID=707589 RepID=UPI001FAEB7E7)
HSP 1 Score: 82.4 bits (202), Expect = 1.270e-15
Identity = 47/131 (35.88%), Postives = 75/131 (57.25%), Query Frame = 1
Query: 16 RTFSIPAGSTEAVIKFDLYRFDSWDDFADFGFDRFEVDIDGTQI-FSLPFPNPQAARSGTTGNVDWSHSPLTGMEELGFVTGQFWF----DQLHRFIITVDNPGATLNVTLRADLSQPQTDESAGFDNFSL 393
+TF++ + +AVI+FDLY DSWDD + F +++ G I L + +A SGT+GNV+WS P +LGF + W+ DQ+H+ + + +PG+ LN+ L + L + +ES G DN S+
Sbjct: 1989 KTFALAGDADKAVIEFDLYEIDSWDD------EEFIIEVAGEGIRIPLSVHSDEAELSGTSGNVNWSFEPQGESADLGFTSA--WYVEGTDQIHKVRLEIADPGSELNLKLSSTLDEFIENESWGIDNLSV 2111
BLAST of mRNA_P-canaliculata_contig99775.24094.1 vs. uniprot
Match:
A0A7X0JUD8_9GAMM (Uncharacterized protein n=1 Tax=Pseudoteredinibacter isoporae TaxID=570281 RepID=A0A7X0JUD8_9GAMM)
HSP 1 Score: 76.6 bits (187), Expect = 1.310e-13
Identity = 46/131 (35.11%), Postives = 67/131 (51.15%), Query Frame = 1
Query: 16 RTFSIPAGSTEAVIKFDLYRFDSWDDFADFGFDRFEVDIDGTQI-FSLPFPNPQAARSGTTGNVDWSHSPLTGMEELGFVTGQFWF----DQLHRFIITVDNPGATLNVTLRADLSQPQTDESAGFDNFSL 393
+TF++ +G+ AVI+FDLY DSWD+ + F +D++G +I L + A SGT G+V WS P LGF W+ DQ+H I V P L + L + L + +ES G DN +
Sbjct: 385 KTFALGSGAESAVIEFDLYEIDSWDN------ENFIIDVNGERIEIPLSYTRDDEANSGTQGSVSWSLVPQGPASNLGFTNA--WYIQGTDQIHTVRIEVQQPSDQLTLKLSSSLDEWVENESWGIDNLRI 507
BLAST of mRNA_P-canaliculata_contig99775.24094.1 vs. uniprot
Match:
UPI0019B1D858 (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI0019B1D858)
HSP 1 Score: 50.8 bits (120), Expect = 7.760e-5
Identity = 41/117 (35.04%), Postives = 54/117 (46.15%), Query Frame = 1
Query: 55 IKFDLYRFDSWDDFAD-FGFDRFEVDIDGTQIFSLPFPNPQAARSGTTGNVDWSHSPLTGMEELGFVTGQFWFDQLHRFIIT-VDNPGATLNVTLRADLSQPQTDESAGFDNFSLTV 399
+ FD + DSWD + G DRFEV I+GT +F+ F N +S ++ P G LGF G+ W D +R I V PG T L P DES G D+ L+
Sbjct: 102 LAFDFHCIDSWDGYEPTHGIDRFEVRINGTNMFNETFANQHNLQS-------YTEPPTLGRAHLGF-DGR-WLDSSYRLTIPFVVAPGTTSFTFEGIGLLGPLGDESWGLDDVHLST 209
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99775.24094.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 1.27e-15 / Id = 35.88 Expect = 1.31e-13 / Id = 35.11 Expect = 7.76e-5 / Id = 35.04 Sequence UPI001FAEB7E7 A0A7X0JUD8_9GAMM UPI0019B1D858
Match Name E-value Identity Description
UPI001FAEB7E7 1.270e-15 35.88 cadherin repeat domain-containing protein n=1 Tax=... [more] A0A7X0JUD8_9GAMM 1.310e-13 35.11 Uncharacterized protein n=1 Tax=Pseudoteredinibact... [more] UPI0019B1D858 7.760e-5 35.04 Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Bacteria Seed ortholog score 62.4 Seed ortholog evalue 1.9e-07 Seed eggNOG ortholog 290400.Jann_3681 EggNOG free text desc. COG2931 RTX toxins and related Ca2 -binding proteins EggNOG OGs 1MU7T@1224,2TRVY@28211,COG2931@1,COG2931@2 COG Functional cat. Q Best tax level Alphaproteobacteria Best eggNOG OG NA|NA|NA Hectar predicted targeting category other localisation Exons 1 Model size 408 Cds size 408 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817357.0682535-CDS-P-canaliculata_contig99775:621..1029 1622817357.0682535-CDS-P-canaliculata_contig99775:621..1029 Pelvetia canaliculata dioecious CDS P-canaliculata_contig99775 622..1029 - 1693495244.7243423-CDS-P-canaliculata_contig99775:621..1029 1693495244.7243423-CDS-P-canaliculata_contig99775:621..1029 Pelvetia canaliculata dioecious CDS P-canaliculata_contig99775 622..1029 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99775.24094.1
>prot_P-canaliculata_contig99775.24094.1 ID=prot_P-canaliculata_contig99775.24094.1|Name=mRNA_P-canaliculata_contig99775.24094.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=136bp
QQSTSRTFSIPAGSTEAVIKFDLYRFDSWDDFADFGFDRFEVDIDGTQIF back to top mRNA from alignment at P-canaliculata_contig99775:622..1029-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99775.24094.1 ID=mRNA_P-canaliculata_contig99775.24094.1|Name=mRNA_P-canaliculata_contig99775.24094.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at P-canaliculata_contig99775:622..1029- (Pelvetia canaliculata dioecious)CAACAAAGTACATCGCGGACGTTTTCCATTCCCGCCGGCTCGACCGAAGC
TGTTATAAAGTTCGATTTATATAGATTTGACAGTTGGGATGATTTTGCGG
ATTTTGGTTTTGACCGATTTGAAGTCGATATTGACGGCACTCAGATTTTC
TCCTTACCCTTCCCGAACCCCCAAGCGGCCAGGTCAGGCACGACAGGCAA
TGTCGATTGGTCCCACAGTCCTCTGACCGGGATGGAGGAACTGGGGTTTG
TCACGGGGCAATTCTGGTTTGATCAACTCCACAGATTTATCATCACCGTC
GATAATCCGGGCGCTACGTTGAACGTCACCCTCCGGGCGGATTTGAGCCA
GCCCCAAACCGACGAGTCTGCGGGATTTGATAATTTTTCTTTGACGGTAG
ATGCGCCT back to top Coding sequence (CDS) from alignment at P-canaliculata_contig99775:622..1029-
>mRNA_P-canaliculata_contig99775.24094.1 ID=mRNA_P-canaliculata_contig99775.24094.1|Name=mRNA_P-canaliculata_contig99775.24094.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at P-canaliculata_contig99775:622..1029- (Pelvetia canaliculata dioecious) back to top