mRNA_P-canaliculata_contig99775.24094.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig99775.24094.1 vs. uniprot
Match: UPI001FAEB7E7 (cadherin repeat domain-containing protein n=1 Tax=Amphritea spongicola TaxID=707589 RepID=UPI001FAEB7E7) HSP 1 Score: 82.4 bits (202), Expect = 1.270e-15 Identity = 47/131 (35.88%), Postives = 75/131 (57.25%), Query Frame = 1 Query: 16 RTFSIPAGSTEAVIKFDLYRFDSWDDFADFGFDRFEVDIDGTQI-FSLPFPNPQAARSGTTGNVDWSHSPLTGMEELGFVTGQFWF----DQLHRFIITVDNPGATLNVTLRADLSQPQTDESAGFDNFSL 393
+TF++ + +AVI+FDLY DSWDD + F +++ G I L + +A SGT+GNV+WS P +LGF + W+ DQ+H+ + + +PG+ LN+ L + L + +ES G DN S+
Sbjct: 1989 KTFALAGDADKAVIEFDLYEIDSWDD------EEFIIEVAGEGIRIPLSVHSDEAELSGTSGNVNWSFEPQGESADLGFTSA--WYVEGTDQIHKVRLEIADPGSELNLKLSSTLDEFIENESWGIDNLSV 2111
BLAST of mRNA_P-canaliculata_contig99775.24094.1 vs. uniprot
Match: A0A7X0JUD8_9GAMM (Uncharacterized protein n=1 Tax=Pseudoteredinibacter isoporae TaxID=570281 RepID=A0A7X0JUD8_9GAMM) HSP 1 Score: 76.6 bits (187), Expect = 1.310e-13 Identity = 46/131 (35.11%), Postives = 67/131 (51.15%), Query Frame = 1 Query: 16 RTFSIPAGSTEAVIKFDLYRFDSWDDFADFGFDRFEVDIDGTQI-FSLPFPNPQAARSGTTGNVDWSHSPLTGMEELGFVTGQFWF----DQLHRFIITVDNPGATLNVTLRADLSQPQTDESAGFDNFSL 393
+TF++ +G+ AVI+FDLY DSWD+ + F +D++G +I L + A SGT G+V WS P LGF W+ DQ+H I V P L + L + L + +ES G DN +
Sbjct: 385 KTFALGSGAESAVIEFDLYEIDSWDN------ENFIIDVNGERIEIPLSYTRDDEANSGTQGSVSWSLVPQGPASNLGFTNA--WYIQGTDQIHTVRIEVQQPSDQLTLKLSSSLDEWVENESWGIDNLRI 507
BLAST of mRNA_P-canaliculata_contig99775.24094.1 vs. uniprot
Match: UPI0019B1D858 (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI0019B1D858) HSP 1 Score: 50.8 bits (120), Expect = 7.760e-5 Identity = 41/117 (35.04%), Postives = 54/117 (46.15%), Query Frame = 1 Query: 55 IKFDLYRFDSWDDFAD-FGFDRFEVDIDGTQIFSLPFPNPQAARSGTTGNVDWSHSPLTGMEELGFVTGQFWFDQLHRFIIT-VDNPGATLNVTLRADLSQPQTDESAGFDNFSLTV 399
+ FD + DSWD + G DRFEV I+GT +F+ F N +S ++ P G LGF G+ W D +R I V PG T L P DES G D+ L+
Sbjct: 102 LAFDFHCIDSWDGYEPTHGIDRFEVRINGTNMFNETFANQHNLQS-------YTEPPTLGRAHLGF-DGR-WLDSSYRLTIPFVVAPGTTSFTFEGIGLLGPLGDESWGLDDVHLST 209 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99775.24094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99775.24094.1 >prot_P-canaliculata_contig99775.24094.1 ID=prot_P-canaliculata_contig99775.24094.1|Name=mRNA_P-canaliculata_contig99775.24094.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=136bp QQSTSRTFSIPAGSTEAVIKFDLYRFDSWDDFADFGFDRFEVDIDGTQIFback to top mRNA from alignment at P-canaliculata_contig99775:622..1029- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig99775.24094.1 ID=mRNA_P-canaliculata_contig99775.24094.1|Name=mRNA_P-canaliculata_contig99775.24094.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at P-canaliculata_contig99775:622..1029- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig99775:622..1029- >mRNA_P-canaliculata_contig99775.24094.1 ID=mRNA_P-canaliculata_contig99775.24094.1|Name=mRNA_P-canaliculata_contig99775.24094.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at P-canaliculata_contig99775:622..1029- (Pelvetia canaliculata dioecious)back to top |