mRNA_P-canaliculata_contig9958.24072.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9958.24072.1
Unique NamemRNA_P-canaliculata_contig9958.24072.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig9958.24072.1 vs. uniprot
Match: A0A6H5KNA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNA0_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.290e-10
Identity = 63/142 (44.37%), Postives = 72/142 (50.70%), Query Frame = -1 
Query:   88 GLDSSTDKEVMAILSSPGRQK--LVKPQPRPGALATAVTCLRPPLPSESIVNGKVLPGPAAVADSSGSDYSSEAA---------VAVPVGDG------------GEASSS---TEVLPKSTNASWDPQVQSSSSAFSVPAGR 435
            G D+S DKEVMAILSSP +QK  +VKPQPRPG            +P+    NG     P A A + G D     A         V   VG G            G A+ S   T  LPK ++ASWDP VQSSSSAFSVPAGR
Sbjct:   11 GGDASADKEVMAILSSPVQQKKFVVKPQPRPGGA----------IPASPAANGNAAFVPPASATTLGGDRRDATAGLPRVRCGAVEAVVGGGXXXXXIGAVDATGLAAPSPPQTPGLPKPSSASWDPHVQSSSSAFSVPAGR 142
[Close]
BLAST of mRNA_P-canaliculata_contig9958.24072.1 vs. uniprot
Match: D8LN70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN70_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 4.400e-10
Identity = 62/151 (41.06%), Postives = 72/151 (47.68%), Query Frame = -1 
Query:   73 GLDSSTDKEVMAILSSPGRQK--LVKPQPRPGALATAVTCLRPPLPSESIVNGKVLPGPAAVADSSGSDYSSEAAVAVPVGDGGEASSSTEV----------------------------LPKSTNASWDPQVQSSSSAFSVPAGRGAGRG 435
            G D+S DKEVMAILSSP +QK  +VKPQPRPG             P+    NG     P +   + GSD     A A+P   GG   +   V                            LPK ++ASWDP VQSSSSAFSVPAGRG G G
Sbjct:   11 GGDASADKEVMAILSSPAQQKKFVVKPQPRPGGA----------FPASPAANGNAAFVPPSSVAALGSDLRDTTA-ALP---GGRCGAVEAVVGGGXXXXXXXXXXXXXXXXXXXXXXXGLPKPSSASWDPHVQSSSSAFSVPAGRGGGGG 147
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9958.24072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNA0_9PHAE2.290e-1044.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN70_ECTSI4.400e-1041.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9958contigP-canaliculata_contig9958:6491..7102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size612
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.32109-CDS-P-canaliculata_contig9958:6490..67991622817355.32109-CDS-P-canaliculata_contig9958:6490..6799Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9958 6491..6799 +
1693495243.43255-CDS-P-canaliculata_contig9958:6490..67991693495243.43255-CDS-P-canaliculata_contig9958:6490..6799Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9958 6491..6799 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.332385-UTR-P-canaliculata_contig9958:6799..71021622817355.332385-UTR-P-canaliculata_contig9958:6799..7102Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9958 6800..7102 +
1693495243.4513695-UTR-P-canaliculata_contig9958:6799..71021693495243.4513695-UTR-P-canaliculata_contig9958:6799..7102Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9958 6800..7102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9958.24072.1prot_P-canaliculata_contig9958.24072.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9958 6491..6799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9958.24072.1

>prot_P-canaliculata_contig9958.24072.1 ID=prot_P-canaliculata_contig9958.24072.1|Name=mRNA_P-canaliculata_contig9958.24072.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=103bp
ASESQPSQTRTPPPSNTLGSTGLVPASSAPSRRHRKRAARALNLRIPRSI
RRFRQHLCTTTGFASIAYRYCHCRLAGIVASTGVSDCCRAWQHLSIDDAL
GR*
back to top

mRNA from alignment at P-canaliculata_contig9958:6491..7102+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9958.24072.1 ID=mRNA_P-canaliculata_contig9958.24072.1|Name=mRNA_P-canaliculata_contig9958.24072.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=612bp|location=Sequence derived from alignment at P-canaliculata_contig9958:6491..7102+ (Pelvetia canaliculata dioecious)
GCCTCCGAGAGTCAGCCCTCCCAGACCCGCACCCCCCCTCCCTCCAACAC
CCTGGGAAGCACCGGGCTTGTCCCCGCGTCCAGCGCCCCTTCCCGCCGGC
ACCGAAAACGCGCTGCTCGAGCTCTGAACCTGCGGATCCCAAGAAGCATT
CGTCGATTTCGGCAGCACCTCTGTACTACTACTGGCTTCGCCTCCATCGC
CTACCGGTACTGCCACTGCCGCCTCGCTGGAATAGTCGCTTCCACTGGAG
TCAGCGACTGCTGCAGGGCCTGGCAGCACCTTTCCATTGACGATGCTCTC
GGAAGGTAGCGGCGGCCTGAGACAAGTCACCGCGGTCGCGAGGGCCCCCG
GTCTGGGCTGGGGCTTGACCAGCTTCTGCCGGCCCGGGCTAGAGAGAATC
GCCATCACCTCCTTGTCCGTGGACGAGTCCAAGCCCGGGTGCATGGCTGC
GGCGGCCGTCCAAAACGCTGCTTACAAGCGCCTCGCGTGTGGATCTGTCG
GCGCCGACTAAAGCCCTGCCGACTATGAATTTGAGAGGACCGAGTAGGGA
CAAGTACTTTTTGCGTCTGCTTGGCCGGCCCGATGTAAAGAAAGTCTCCA
GCTCCTCCAGCT
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig9958:6491..7102+

>mRNA_P-canaliculata_contig9958.24072.1 ID=mRNA_P-canaliculata_contig9958.24072.1|Name=mRNA_P-canaliculata_contig9958.24072.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at P-canaliculata_contig9958:6491..7102+ (Pelvetia canaliculata dioecious)
GCCTCCGAGAGTCAGCCCTCCCAGACCCGCACCCCCCCTCCCTCCAACAC
CCTGGGAAGCACCGGGCTTGTCCCCGCGTCCAGCGCCCCTTCCCGCCGGC
ACCGAAAACGCGCTGCTCGAGCTCTGAACCTGCGGATCCCAAGAAGCATT
CGTCGATTTCGGCAGCACCTCTGTACTACTACTGGCTTCGCCTCCATCGC
CTACCGGTACTGCCACTGCCGCCTCGCTGGAATAGTCGCTTCCACTGGAG
TCAGCGACTGCTGCAGGGCCTGGCAGCACCTTTCCATTGACGATGCTCTC
GGAAGGTAGGCCTCCGAGAGTCAGCCCTCCCAGACCCGCACCCCCCCTCC
CTCCAACACCCTGGGAAGCACCGGGCTTGTCCCCGCGTCCAGCGCCCCTT
CCCGCCGGCACCGAAAACGCGCTGCTCGAGCTCTGAACCTGCGGATCCCA
AGAAGCATTCGTCGATTTCGGCAGCACCTCTGTACTACTACTGGCTTCGC
CTCCATCGCCTACCGGTACTGCCACTGCCGCCTCGCTGGAATAGTCGCTT
CCACTGGAGTCAGCGACTGCTGCAGGGCCTGGCAGCACCTTTCCATTGAC
GATGCTCTCGGAAGGTAG
back to top